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Clc02G11170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G11170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationClcChr02:19885016..19885291
RNA-Seq ExpressionClc02G11170
SyntenyClc02G11170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019150696.1 PREDICTED: uncharacterized protein LOC109147552 [Ipomoea nil]5.4e-1649.45Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPP------------------------GIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        M+P G+ +EHI+LRAFPFSLKD  KDWL   PP                         IRKEIY I Q  GETL+EYWERFK LC++ P+H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPP------------------------GIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

XP_019183625.1 PREDICTED: uncharacterized protein LOC109178444 [Ipomoea nil]5.4e-1649.45Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPP------------------------GIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        M+P G+ +EHI+LRAFPFSLKD  KDWL   PP                         IRKEIY I Q  GETL+EYWERFK LC++ P+H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPP------------------------GIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

XP_019188859.1 PREDICTED: uncharacterized protein LOC109183094 [Ipomoea nil]5.4e-1649.45Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPP------------------------GIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        M+P G+ +EHI+LRAFPFSLKD  KDWL   PP                         IRKEIY I Q  GETL+EYWERFK LC++ P+H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPP------------------------GIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

XP_022156327.1 uncharacterized protein LOC111023248 [Momordica charantia]3.1e-1650.55Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        M+PHG+ E+ INLRAF FSLKD  KD L + P G                        IRKEIY I+Q  GETL+EYWERFKRLC +FP+H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

XP_031112037.1 uncharacterized protein LOC116016008 [Ipomoea triloba]5.4e-1650.55Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPP------------------------GIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        M+P G+ +EHI LRAFPFSLKD  KDWL   PP                         IRKEIY I Q  GETLFEYWERFK LC++ P+H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPP------------------------GIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

TrEMBL top hitse value%identityAlignment
A0A151QQH7 Retrotrans_gag domain-containing protein2.2e-1546.15Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        MRPH + E+HI L+AFPFSL+D  KDWL +  PG                        I+K+I+ I Q +GE+L+EYWERFKRLC +FP+H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

A0A5A7SRF5 Retrotransposon gag protein9.8e-1649.45Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        MRPHGI EE +NLRAFPFSL D  K WL +  PG                        IRKEIY I Q  GE+L +YWE+FK LC NFP+H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

A0A6J1DRS5 uncharacterized protein LOC1110232481.5e-1650.55Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        M+PHG+ E+ INLRAF FSLKD  KD L + P G                        IRKEIY I+Q  GETL+EYWERFKRLC +FP+H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

A0A6P6TES6 uncharacterized protein LOC1137006972.9e-1548.35Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        M+P GI EE I +RAFPFSLKD  KDWL + PPG                        +RKEI  I Q  GE+L+EYWERFK+LCT  P H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

A0A6P6UL97 uncharacterized protein LOC1137115432.9e-1547.25Show/hide
Query:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH
        M+P GI EE I +RAFPFSLKD  KDWL + PPG                        +RKEI  I Q  GE+L+EYWERFK+LC  +P H
Subjt:  MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPG------------------------IRKEIYEISQTVGETLFEYWERFKRLCTNFPNH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACCACATGGCATAATTGAGGAGCATATCAACCTCAGAGCCTTCCCTTTCTCCCTAAAAGATGATGTGAAGGATTGGCTTGACTTCTTTCCTCCAGGAATCAGGAA
GGAAATCTACGAAATTTCCCAGACGGTGGGAGAGACATTATTCGAGTACTGGGAGCGGTTCAAACGCTTGTGCACCAACTTCCCTAACCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACCACATGGCATAATTGAGGAGCATATCAACCTCAGAGCCTTCCCTTTCTCCCTAAAAGATGATGTGAAGGATTGGCTTGACTTCTTTCCTCCAGGAATCAGGAA
GGAAATCTACGAAATTTCCCAGACGGTGGGAGAGACATTATTCGAGTACTGGGAGCGGTTCAAACGCTTGTGCACCAACTTCCCTAACCACTAG
Protein sequenceShow/hide protein sequence
MRPHGIIEEHINLRAFPFSLKDDVKDWLDFFPPGIRKEIYEISQTVGETLFEYWERFKRLCTNFPNH