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Clc02G11180 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G11180
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr02:19885435..19886322
RNA-Seq ExpressionClc02G11180
SyntenyClc02G11180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031250524.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116108411 [Pistacia vera]1.4e-0429.23Show/hide
Query:  ANQGHGNLGMPLEDVGKLPSQPTPNV-QNVSAIFVSYAMD-------PLPEEPIGEPI------EIVSATSSPTKRGVRFNPP---LNLHISTNVLRAPF
        +N GH    +     GKLPSQP  N  +N SAI +  +         P  E+ +G+ +      +  SA +SPT      +PP    N+ I+T     PF
Subjt:  ANQGHGNLGMPLEDVGKLPSQPTPNV-QNVSAIFVSYAMD-------PLPEEPIGEPI------EIVSATSSPTKRGVRFNPP---LNLHISTNVLRAPF

Query:  FSRLTVAQGGSRKEEVRSA---------LFLKIQKLPVESKKVWTEVCREERKDENKQEDEVRQEV--VLPGNFPIKQEDPDTFSVPCQIGTRRF
         SR  +++    ++E+  A         L   I+++P    K   E+C  +RK +  +   V + V  VL    P K +DP +F++PC IG  RF
Subjt:  FSRLTVAQGGSRKEEVRSA---------LFLKIQKLPVESKKVWTEVCREERKDENKQEDEVRQEV--VLPGNFPIKQEDPDTFSVPCQIGTRRF
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGCAGTTCGGGACGTGAGCTCCTGGCAGTACCACGTCTTCACGAAAGTACCACATCTTTGGTGAAGCAGGTTTTTGCTGCCAAGCAGCAATCCCAGGAG
CCAACTGAGGTCAGTTATGCTAGCAATCAACAAGGTGAGCGGATTTACAACTACAATTGTTGGGGCGGTCAGGCGAACCAGGGCCATGGCAATTTAGGGATGCCT
TTGGAGGATGTGGGGAAGCTTCCTTCCCAGCCCACACCGAACGTGCAGAACGTGAGTGCCATCTTTGTGAGCTACGCGATGGACCCCTTGCCTGAGGAGCCCATA
GGTGAACCTATAGAGATAGTGAGCGCTACGAGCTCACCAACGAAACGTGGGGTAAGATTCAATCCACCTCTCAATTTACATATTTCCACTAATGTTCTCCGTGCT
CCCTTCTTTAGCAGGTTGACTGTTGCTCAGGGAGGATCACGTAAAGAAGAGGTGAGGTCTGCTCTGTTTCTCAAAATTCAGAAGCTCCCTGTTGAGAGCAAAAAG
GTGTGGACTGAAGTTTGTCGAGAGGAAAGGAAGGATGAAAATAAACAAGAAGATGAAGTCCGCCAAGAGGTAGTTCTTCCAGGTAATTTTCCAATCAAACAGGAG
GACCCAGATACGTTTTCTGTTCCTTGTCAGATAGGAACTAGAAGATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACAGCAGTTCGGGACGTGAGCTCCTGGCAGTACCACGTCTTCACGAAAGTACCACATCTTTGGTGAAGCAGGTTTTTGCTGCCAAGCAGCAATCCCAGGAG
CCAACTGAGGTCAGTTATGCTAGCAATCAACAAGGTGAGCGGATTTACAACTACAATTGTTGGGGCGGTCAGGCGAACCAGGGCCATGGCAATTTAGGGATGCCT
TTGGAGGATGTGGGGAAGCTTCCTTCCCAGCCCACACCGAACGTGCAGAACGTGAGTGCCATCTTTGTGAGCTACGCGATGGACCCCTTGCCTGAGGAGCCCATA
GGTGAACCTATAGAGATAGTGAGCGCTACGAGCTCACCAACGAAACGTGGGGTAAGATTCAATCCACCTCTCAATTTACATATTTCCACTAATGTTCTCCGTGCT
CCCTTCTTTAGCAGGTTGACTGTTGCTCAGGGAGGATCACGTAAAGAAGAGGTGAGGTCTGCTCTGTTTCTCAAAATTCAGAAGCTCCCTGTTGAGAGCAAAAAG
GTGTGGACTGAAGTTTGTCGAGAGGAAAGGAAGGATGAAAATAAACAAGAAGATGAAGTCCGCCAAGAGGTAGTTCTTCCAGGTAATTTTCCAATCAAACAGGAG
GACCCAGATACGTTTTCTGTTCCTTGTCAGATAGGAACTAGAAGATTTTAG
Protein sequenceShow/hide protein sequence
MHSSSGRELLAVPRLHESTTSLVKQVFAAKQQSQEPTEVSYASNQQGERIYNYNCWGGQANQGHGNLGMPLEDVGKLPSQPTPNVQNVSAIFVSYAMDPLPEEPI
GEPIEIVSATSSPTKRGVRFNPPLNLHISTNVLRAPFFSRLTVAQGGSRKEEVRSALFLKIQKLPVESKKVWTEVCREERKDENKQEDEVRQEVVLPGNFPIKQE
DPDTFSVPCQIGTRRF