; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G11210 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G11210
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationClcChr02:20002572..20003790
RNA-Seq ExpressionClc02G11210
SyntenyClc02G11210
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3460475.1 Retrotransposon gag protein [Gossypium australe]9.3e-0545.95Show/hide
Query:  ASQTAANATAPRVDP-VDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGG-NNQPEQHGAPLNN
        A  T AN   P   P  ++E M ++ +      ++R  NNPYSNTYNP WRNH NFSWGG  NQ  Q   P  N
Subjt:  ASQTAANATAPRVDP-VDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGG-NNQPEQHGAPLNN

KAG9458322.1 hypothetical protein H6P81_002830 [Aristolochia fimbriata]7.1e-0539.76Show/hide
Query:  MEIFYDGLTKASQTAANATAPRVDPVDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQ
        +EIFY+G+T ++Q+  +A A     ++ ET   V H+ I+ +     N+P+SNTYNP WR+H NFSW  N   +     LN Q
Subjt:  MEIFYDGLTKASQTAANATAPRVDPVDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQ

XP_040366388.1 uncharacterized protein LOC121050459 [Rosa chinensis]1.2e-0450.72Show/hide
Query:  RNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTKS----HGQLHQGVQSFV
        RN+PYSNTYNP WRNH NFSW      +Q G    +QGG  GF  G Q Q  S    HG  HQG   F+
Subjt:  RNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTKS----HGQLHQGVQSFV

XP_040371113.1 uncharacterized protein LOC121051804 [Rosa chinensis]7.1e-0550.72Show/hide
Query:  RNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTKS----HGQLHQGVQSFV
        RN+PYSNTYNP WRNH NFSW      +Q G    +QGG  GF  G Q Q  S    HG +HQG   F+
Subjt:  RNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTKS----HGQLHQGVQSFV

XP_040375383.1 uncharacterized protein LOC121053079 [Rosa chinensis]7.1e-0550.72Show/hide
Query:  RNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTKS----HGQLHQGVQSFV
        RN+PYSNTYNP WRNH NFSW      +Q G    +QGG  GF  G Q Q  S    HG +HQG   F+
Subjt:  RNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTKS----HGQLHQGVQSFV

TrEMBL top hitse value%identityAlignment
A0A5B6UZH7 Retrotransposon gag protein1.0e-0445.95Show/hide
Query:  ASQTAANATAPRVDP-VDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGG-NNQPEQHGAPLNN
        AS   AN   P   P  + E M ++ +      ++R  NNPYSNTYNP WRNH NFSWGG  NQ  Q   P  N
Subjt:  ASQTAANATAPRVDP-VDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGG-NNQPEQHGAPLNN

A0A5B6UZH9 Retrotransposon gag protein4.5e-0545.95Show/hide
Query:  ASQTAANATAPRVDP-VDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGG-NNQPEQHGAPLNN
        A  T AN   P   P  ++E M ++ +      ++R  NNPYSNTYNP WRNH NFSWGG  NQ  Q   P  N
Subjt:  ASQTAANATAPRVDP-VDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGG-NNQPEQHGAPLNN

A0A5B6V903 Integrase1.0e-0437.36Show/hide
Query:  MRSQCEFMEIFYDGLTKASQTAAN---ATAPRVDPVDDETMRWVHHKMIQLL--HYRHRNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAP
        + +Q E +    DGL  +SQ   N          P +  T     ++ +Q +  ++R +NNPYSNTYNP WRNH NFSWGG     Q   P
Subjt:  MRSQCEFMEIFYDGLTKASQTAAN---ATAPRVDPVDDETMRWVHHKMIQLL--HYRHRNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAP

A0A6J1CR45 uncharacterized protein LOC1110134641.0e-0456.14Show/hide
Query:  HYRHRN-NPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTK
        H  +RN NPYSNTYNP WR+H NFSWGG             QGGSSGF+ GQ +Q K
Subjt:  HYRHRN-NPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTK

A0A6J1E110 uncharacterized protein LOC1110254241.0e-0458Show/hide
Query:  NPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTK
        NPYSNTYNP WR+H NFSWGG             QGGSSGF+ GQ +Q K
Subjt:  NPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSGFHWGQQKQTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCTTAGAAATAAGATCAATGTGGCATCGAAGCATTGGGAGATGCGTTCTCAATGTGAATTTATGGAGATATTTTATGATGGTTTAACTAAAGCGTCTCAGACAGC
TGCAAACGCTACCGCACCTAGAGTTGATCCGGTAGACGATGAAACAATGCGCTGGGTGCACCATAAAATGATACAATTGCTACATTACAGGCACAGAAACAACCCTTATT
CCAACACATACAACCCTGTATGGAGGAATCATTCCAACTTTTCATGGGGTGGAAATAACCAGCCTGAACAACACGGTGCCCCGTTGAACAACCAAGGTGGATCATCTGGA
TTCCACTGGGGACAACAAAAACAAACTAAATCTCATGGACAATTGCATCAAGGCGTCCAGTCCTTCGTCGTCAATGGAAGCTCTCTTAAAAGAATACATGCAAAAGAATG
A
mRNA sequenceShow/hide mRNA sequence
ATGTGTCTTAGAAATAAGATCAATGTGGCATCGAAGCATTGGGAGATGCGTTCTCAATGTGAATTTATGGAGATATTTTATGATGGTTTAACTAAAGCGTCTCAGACAGC
TGCAAACGCTACCGCACCTAGAGTTGATCCGGTAGACGATGAAACAATGCGCTGGGTGCACCATAAAATGATACAATTGCTACATTACAGGCACAGAAACAACCCTTATT
CCAACACATACAACCCTGTATGGAGGAATCATTCCAACTTTTCATGGGGTGGAAATAACCAGCCTGAACAACACGGTGCCCCGTTGAACAACCAAGGTGGATCATCTGGA
TTCCACTGGGGACAACAAAAACAAACTAAATCTCATGGACAATTGCATCAAGGCGTCCAGTCCTTCGTCGTCAATGGAAGCTCTCTTAAAAGAATACATGCAAAAGAATG
A
Protein sequenceShow/hide protein sequence
MCLRNKINVASKHWEMRSQCEFMEIFYDGLTKASQTAANATAPRVDPVDDETMRWVHHKMIQLLHYRHRNNPYSNTYNPVWRNHSNFSWGGNNQPEQHGAPLNNQGGSSG
FHWGQQKQTKSHGQLHQGVQSFVVNGSSLKRIHAKE