; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G11630 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G11630
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr02:22402684..22406860
RNA-Seq ExpressionClc02G11630
SyntenyClc02G11630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026069.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-2143.46Show/hide
Query:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW
        MMVHFN+AEMN A+IDEAS                                    QT+ES+ K K   GEAN+A+ ++KFHRGSTSGTK   SS   KKW
Subjt:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW

Query:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
        KK     GNK                                            GKMTKRPFTGKG+RAKE LELVHSDLCGPMNVKARGG
Subjt:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-2143.46Show/hide
Query:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW
        MMVHFN+A MNEA+IDEAS                                    QT+ES+ K K   GEAN+A+ ++KFHRGSTSGTK   SS   KKW
Subjt:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW

Query:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
        KK     GNK                                            GKMTKRPFTGKG+RAKE LELVHSDLCGPMNVKARGG
Subjt:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

KAA0037371.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-2247.02Show/hide
Query:  MMVHFNMAEMNEAIIDEAS-------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTKF-ASSFTKKKWKK-----GNKG------------
        MM+HFN+AEM EA+IDEAS             QT+ES+ K K   GEAN+A+ ++KFHRGS SG KF  SS   KKWKK     GNK             
Subjt:  MMVHFNMAEMNEAIIDEAS-------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTKF-ASSFTKKKWKK-----GNKG------------

Query:  -------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
                                       GKMTKRPFTGKG+R KE LELVHS+LCGPMNVKARGG
Subjt:  -------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-2142.93Show/hide
Query:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW
        MMVHFN+AEMN A+IDEAS                                    QT+ES+ K K   GEAN+A+ ++KFHRGSTSGTK   SS   KKW
Subjt:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW

Query:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
        KK     GNK                                            GKMTKRPFTGKG++AKE LELVHSDLCGPMNVKARGG
Subjt:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

TYK28896.1 gag/pol protein [Cucumis melo var. makuwa]4.5e-2042.41Show/hide
Query:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW
        MMVHFN+AEMN A+IDEAS                                    Q +ES+ K K   GEAN+A+ ++KFHRGST GTK   SS   KKW
Subjt:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW

Query:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
        KK     GNK                                            GKMTKRPFTGKG+RAKE LELVHSDLCGPMNVKARGG
Subjt:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

TrEMBL top hitse value%identityAlignment
A0A5A7SLD1 Gag/pol protein1.2e-2143.46Show/hide
Query:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW
        MMVHFN+AEMN A+IDEAS                                    QT+ES+ K K   GEAN+A+ ++KFHRGSTSGTK   SS   KKW
Subjt:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW

Query:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
        KK     GNK                                            GKMTKRPFTGKG+RAKE LELVHSDLCGPMNVKARGG
Subjt:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

A0A5A7SNP8 Gag/pol protein1.2e-2143.46Show/hide
Query:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW
        MMVHFN+A MNEA+IDEAS                                    QT+ES+ K K   GEAN+A+ ++KFHRGSTSGTK   SS   KKW
Subjt:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW

Query:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
        KK     GNK                                            GKMTKRPFTGKG+RAKE LELVHSDLCGPMNVKARGG
Subjt:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

A0A5A7T706 Gag/pol protein8.0e-2347.02Show/hide
Query:  MMVHFNMAEMNEAIIDEAS-------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTKF-ASSFTKKKWKK-----GNKG------------
        MM+HFN+AEM EA+IDEAS             QT+ES+ K K   GEAN+A+ ++KFHRGS SG KF  SS   KKWKK     GNK             
Subjt:  MMVHFNMAEMNEAIIDEAS-------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTKF-ASSFTKKKWKK-----GNKG------------

Query:  -------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
                                       GKMTKRPFTGKG+R KE LELVHS+LCGPMNVKARGG
Subjt:  -------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

A0A5A7TC08 Gag/pol protein2.2e-2042.41Show/hide
Query:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW
        MMVHFN+AEMN A+IDEAS                                    Q +ES+ K K   GEAN+A+ ++KFHRGST GTK   SS   KKW
Subjt:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW

Query:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
        KK     GNK                                            GKMTKRPFTGKG+RAKE LELVHSDLCGPMNVKARGG
Subjt:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

A0A5A7U869 Gag/pol protein2.6e-2142.93Show/hide
Query:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW
        MMVHFN+AEMN A+IDEAS                                    QT+ES+ K K   GEAN+A+ ++KFHRGSTSGTK   SS   KKW
Subjt:  MMVHFNMAEMNEAIIDEAS------------------------------------QTYESMHKGKELDGEANIASFSKKFHRGSTSGTK-FASSFTKKKW

Query:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG
        KK     GNK                                            GKMTKRPFTGKG++AKE LELVHSDLCGPMNVKARGG
Subjt:  KK-----GNKG-------------------------------------------GKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTCCACTTCAACATGGCTGAAATGAATGAGGCCATAATTGATGAGGCCAGTCAAACTTATGAGTCCATGCATAAAGGCAAAGAACTAGATGGGGAGGCAAATAT
TGCCAGTTTCTCTAAAAAGTTCCACAGAGGTTCGACCTCTGGAACTAAGTTTGCTTCTTCCTTTACAAAAAAGAAATGGAAGAAGGGTAATAAGGGAGGCAAAATGACCA
AAAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAATCCTTAGAACTTGTACATTCAGACCTTTGTGGTCCTATGAATGTTAAAGCAAGAGGAGGACAAGCTAAGGCA
ATAGCCGAAGGTAAGAAATCTATTAAGGTTATTTTGTGTGTTCTGGATGCCCAGGAGGCGGGCTCACATGCCACCTGCTATTTGGGCATGCATGCTAATGGGCGAGATAT
GCTGCTATTGATGTCCAGGGTTAAGAAGAAAAGAAGTGCGAAGTACGAAGAGACGAAGTTGCTGCGAGAACAAGTGGAAACCCATGCGTCGAGCCTAGGCGTTGAGACCA
TGCATCGAGAAAAAGTAGATACAGACGCATGGCCAAAAGCTGTCATGTCAATATTCAAAAGGATAACACACTATCCGAATATGGCAGAACAAATGGGCCGACGATGTGAA
AAGTCTGCGCAGCAGGGCATGGAATTTAATGTAAAGGTGTCAGGTCATCATGAGTTTCAACTTTTTGACGCCTATAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTCCACTTCAACATGGCTGAAATGAATGAGGCCATAATTGATGAGGCCAGTCAAACTTATGAGTCCATGCATAAAGGCAAAGAACTAGATGGGGAGGCAAATAT
TGCCAGTTTCTCTAAAAAGTTCCACAGAGGTTCGACCTCTGGAACTAAGTTTGCTTCTTCCTTTACAAAAAAGAAATGGAAGAAGGGTAATAAGGGAGGCAAAATGACCA
AAAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAATCCTTAGAACTTGTACATTCAGACCTTTGTGGTCCTATGAATGTTAAAGCAAGAGGAGGACAAGCTAAGGCA
ATAGCCGAAGGTAAGAAATCTATTAAGGTTATTTTGTGTGTTCTGGATGCCCAGGAGGCGGGCTCACATGCCACCTGCTATTTGGGCATGCATGCTAATGGGCGAGATAT
GCTGCTATTGATGTCCAGGGTTAAGAAGAAAAGAAGTGCGAAGTACGAAGAGACGAAGTTGCTGCGAGAACAAGTGGAAACCCATGCGTCGAGCCTAGGCGTTGAGACCA
TGCATCGAGAAAAAGTAGATACAGACGCATGGCCAAAAGCTGTCATGTCAATATTCAAAAGGATAACACACTATCCGAATATGGCAGAACAAATGGGCCGACGATGTGAA
AAGTCTGCGCAGCAGGGCATGGAATTTAATGTAAAGGTGTCAGGTCATCATGAGTTTCAACTTTTTGACGCCTATAAATAA
Protein sequenceShow/hide protein sequence
MMVHFNMAEMNEAIIDEASQTYESMHKGKELDGEANIASFSKKFHRGSTSGTKFASSFTKKKWKKGNKGGKMTKRPFTGKGYRAKESLELVHSDLCGPMNVKARGGQAKA
IAEGKKSIKVILCVLDAQEAGSHATCYLGMHANGRDMLLLMSRVKKKRSAKYEETKLLREQVETHASSLGVETMHREKVDTDAWPKAVMSIFKRITHYPNMAEQMGRRCE
KSAQQGMEFNVKVSGHHEFQLFDAYK