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Clc02G11740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G11740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionActin cytoskeleton-regulatory complex protein
Genome locationClcChr02:22713502..22716007
RNA-Seq ExpressionClc02G11740
SyntenyClc02G11740
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572323.1 hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia]6.0e-1347.31Show/hide
Query:  VVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        + ++ L+C++LA +LLIQ  A+      +  +A P       + + +  PG+AE P IRRLGKHH   S+ GGGV+IGGL TAVFA VFCYIR
Subjt:  VVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

KAG7034949.1 hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-2876.84Show/hide
Query:  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFG   GKE E+  QPGVA GP IRRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Subjt:  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

KGN46704.1 hypothetical protein Csa_020980 [Cucumis sativus]3.8e-2875Show/hide
Query:  MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        MAAVVRL LM ++LAGM  IQLTAANV EAP V TA+ FFG+  GKEE ++ P VAEGPAIRRLGKHHFHTS+ GG VLIG LATAVFA+VFCYIR
Subjt:  MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

XP_022947872.1 uncharacterized protein LOC111451632 [Cucurbita moschata]2.9e-2876.84Show/hide
Query:  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFG   GKE E+  QPGVA GP IRRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Subjt:  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

XP_023532519.1 uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo]1.7e-2875.79Show/hide
Query:  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFGA  G E E+  Q GVA GP IRRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Subjt:  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

TrEMBL top hitse value%identityAlignment
A0A0A0KCY0 Uncharacterized protein1.9e-2875Show/hide
Query:  MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        MAAVVRL LM ++LAGM  IQLTAANV EAP V TA+ FFG+  GKEE ++ P VAEGPAIRRLGKHHFHTS+ GG VLIG LATAVFA+VFCYIR
Subjt:  MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

A0A5D3C590 Uncharacterized protein6.7e-1051.69Show/hide
Query:  LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQ-PGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        L C+++A +LLIQ   A  + A T  T +P   A    E+  R+   VAE P IRRLGKHH   S+ GGGV+IGGL TA+FA VFCYIR
Subjt:  LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQ-PGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

A0A6J1G7L7 uncharacterized protein LOC1114516321.4e-2876.84Show/hide
Query:  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFG   GKE E+  QPGVA GP IRRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Subjt:  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

A5BAN6 Uncharacterized protein2.3e-1050.55Show/hide
Query:  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLGKHH   SI GGGV+IGGLATA+FA VFCYIR
Subjt:  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

F6GXP2 Uncharacterized protein3.9e-1050.55Show/hide
Query:  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR
        RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLGKHH   SI GGGV+IGGLATA+FA VFCYIR
Subjt:  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09280.1 unknown protein7.5e-0635.92Show/hide
Query:  LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHH--FHTSIPGGGVLIGGLATAVFAVVFCYIRS---RDPCVD
        ++C LL   +     A++ AE P    A    G +    EE   P V+      R G HH     S+ GGGV++GGLAT    VVFCYIR+     P  D
Subjt:  LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHH--FHTSIPGGGVLIGGLATAVFAVVFCYIRS---RDPCVD

Query:  DRE
        ++E
Subjt:  DRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGAT
GCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCC
CCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGTAGAACT
CACCAACAGCTGGACATGACCTTACGGTTGGCGGACAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGAT
GCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCC
CCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGTAGAACT
CACCAACAGCTGGACATGACCTTACGGTTGGCGGACAACTAGCGACTGGGACAATGACTATCGGTTGGAGTATGGTTGAGAGAGAGAGAGGTGAATGAAAGGAAGAAGAA
TGTGGCTTCCTTGGGTTGCGTGCGACTACGGTAGGTGGCTTTTCTTCTTTATTTCTTTGCCTAATACATATAAATTAATTCTTTATATTATAAAGTTATAATTTGAATCT
AATTCAAATAAACTTTATAATAAACATGTATGGAATTCTATCCAATACAATTAACATTTTCCCTCAAAATTCGAACACTTTAAATTTTCTTTCAATCATAATTAATCCTT
ATTGGTTCGTTGGGAGC
Protein sequenceShow/hide protein sequence
MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIRSRDPCVDDREQCRT
HQQLDMTLRLADN