CuGenDBv2

Gene ID	Clc02G11785
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem II reaction center protein L
Genome location	ClcChr02:22881867..22882271
RNA-Seq Expression	Clc02G11785
Synteny	Clc02G11785
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0009539 - photosystem II reaction center (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0020037 - heme binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR003372 - Photosystem II PsbL IPR037266 - Photosystem II PsbL superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QKD76372.1 photosystem II protein L [Santalum album]

6.8e-23

96.55

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQCNSSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

WP_222273419.1 hypothetical protein, partial [Modestobacter marinus]

2.6e-22

94.83

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

YP_009387574.1 photosystem II protein L [Hansenia weberbaueriana]

5.2e-23

96.55

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

YP_009860414.1 photosystem II protein L [Litsea cubeba]

2.6e-22

94.83

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

YP_009920018.1 photosystem II protein L [Cinnamomum longipetiolatum]

2.6e-22

94.83

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

TrEMBL top hits

e value

%identity

Alignment

A0A1Y0B539 Photosystem II reaction center protein L

2.5e-23

96.55

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

A0A1Y0B5C9 Photosystem II reaction center protein L

2.5e-23

96.55

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

A0A1Y0B5U7 Photosystem II reaction center protein L

2.5e-23

96.55

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

A0A6C0AB03 Photosystem II reaction center protein L

2.5e-23

96.55

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

A0A7S9HVQ3 Photosystem II protein L

2.5e-23

96.55

Show/hide

Query:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

SwissProt top hits

e value

%identity

Alignment

A1EA23 Photosystem II reaction center protein L

2.3e-13

97.37

Show/hide

Query:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

A4QK33 Photosystem II reaction center protein L

2.3e-13

97.37

Show/hide

Query:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Q67HN6 Photosystem II reaction center protein L

2.3e-13

97.37

Show/hide

Query:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Q6EYW2 Photosystem II reaction center protein L

2.3e-13

97.37

Show/hide

Query:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Q7J1C4 Photosystem II reaction center protein L

2.3e-13

97.37

Show/hide

Query:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00560.1 photosystem II reaction center protein L

6.1e-14

94.74

Show/hide

Query:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
        MTQSNPN+Q+VELNRTSLYWGLLLIFVLAVLFSNYFFN
Subjt:  MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACAAACAAAATGTTGAATTGAATCGTAC
CAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

mRNA sequence

Show/hide mRNA sequence

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACAAACAAAATGTTGAATTGAATCGTAC
CAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Protein sequence

Show/hide protein sequence

MWGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Clc02G11785 (gene) of Watermelon (cordophanus) v2 genome