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Clc02G12090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G12090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr02:23839030..23839476
RNA-Seq ExpressionClc02G12090
SyntenyClc02G12090
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044242.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]8.5e-1458.73Show/hide
Query:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        GV + +D +  MA +L C+  KLPFLYLGL LGGYP+Q  FW+P+ID++H KLDRWK +N+SR
Subjt:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

RVW92050.1 hypothetical protein CK203_037097 [Vitis vinifera]1.4e-1130.41Show/hide
Query:  ITELSSDGNMVLHSFRDIEDETLGYFTDLYSKIPGSKFIPAGLPWQQVS--ISQNHALIAPFRKGETWQQVSISQNHALIAPFRKGVTIDE-DIVNSMAN
        I EL ++  ++L++   I++E L YF  LY+   G  +   GL W  +S   +   +     R   + Q   +     L A       +DE +    +A 
Subjt:  ITELSSDGNMVLHSFRDIEDETLGYFTDLYSKIPGSKFIPAGLPWQQVS--ISQNHALIAPFRKGETWQQVSISQNHALIAPFRKGVTIDE-DIVNSMAN

Query:  RLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLS
         L  +A   P LYLGLP+GG PK   FW P+I+++  +LD W++  LS
Subjt:  RLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLS

TYJ97221.1 putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa]1.3e-1457.14Show/hide
Query:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        GV+I EDI+   A+R+ C+A  LP +YL LPLGGYP+   FWQP+ID++H KLDRWK +N+ R
Subjt:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

XP_038880332.1 uncharacterized protein LOC120071973 [Benincasa hispida]5.9e-1560.32Show/hide
Query:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        G+ I+E+ + S+A +L C+ + LP +YLGLPLGGYPK  SFWQP+IDKL  KLD+W+R+NLSR
Subjt:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

XP_038889274.1 uncharacterized protein LOC120079176 [Benincasa hispida]2.7e-1255.56Show/hide
Query:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        G+ +DE+ + S A  L C+A  LPF YLGLPLGGY K+ SFWQP+++    KLD+WK +NLSR
Subjt:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

TrEMBL top hitse value%identityAlignment
A0A5A7TLN3 Transposon Tf2-9 polyprotein4.1e-1458.73Show/hide
Query:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        GV + +D +  MA +L C+  KLPFLYLGL LGGYP+Q  FW+P+ID++H KLDRWK +N+SR
Subjt:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

A0A5A7U808 Integrase, catalytic core2.5e-1156.45Show/hide
Query:  VTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        V I++   +S A+ L C+  KLP LY GLPLGGYPK   FWQP++DK   KL  WKR NLSR
Subjt:  VTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

A0A5D3BF26 Putative LRR receptor-like serine/threonine-protein kinase6.3e-1557.14Show/hide
Query:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        GV+I EDI+   A+R+ C+A  LP +YL LPLGGYP+   FWQP+ID++H KLDRWK +N+ R
Subjt:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

A0A5D3BQV1 Reverse transcriptase domain-containing protein4.2e-1155.56Show/hide
Query:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        G+ + E  + SMA  LK +   LP +YLGLPLGGY KQ S WQ + DK+H KLD+WKR+N SR
Subjt:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

A0A5D3D2G4 Uncharacterized protein2.5e-1153.97Show/hide
Query:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR
        GV I EDI+  + +R+  +A  LP  Y+GLPLGGYP++  FWQP+ID +H KL+RWK  N+SR
Subjt:  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTACGGAATTGAGTTCAGATGGTAATATGGTGTTGCATTCTTTTCGGGATATAGAAGATGAAACATTGGGGTATTTCACTGATTTATACTCTAAAATCCCAGGTTC
CAAATTCATTCCAGCAGGTTTACCTTGGCAGCAAGTCTCTATTTCACAGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGAAACCTGGCAGCAAGTCTCTATTTCGC
AGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGTGACTATTGATGAAGACATTGTGAATTCCATGGCGAATAGATTGAAGTGCCAAGCTAGGAAATTACCTTTCTTA
TACTTGGGATTGCCTCTTGGAGGGTATCCAAAACAATATTCTTTTTGGCAACCAATAATTGACAAATTACATTTGAAGCTTGATAGATGGAAGAGGTACAATTTGTCAAG
GAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTACGGAATTGAGTTCAGATGGTAATATGGTGTTGCATTCTTTTCGGGATATAGAAGATGAAACATTGGGGTATTTCACTGATTTATACTCTAAAATCCCAGGTTC
CAAATTCATTCCAGCAGGTTTACCTTGGCAGCAAGTCTCTATTTCACAGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGAAACCTGGCAGCAAGTCTCTATTTCGC
AGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGTGACTATTGATGAAGACATTGTGAATTCCATGGCGAATAGATTGAAGTGCCAAGCTAGGAAATTACCTTTCTTA
TACTTGGGATTGCCTCTTGGAGGGTATCCAAAACAATATTCTTTTTGGCAACCAATAATTGACAAATTACATTTGAAGCTTGATAGATGGAAGAGGTACAATTTGTCAAG
GAGGTAG
Protein sequenceShow/hide protein sequence
MITELSSDGNMVLHSFRDIEDETLGYFTDLYSKIPGSKFIPAGLPWQQVSISQNHALIAPFRKGETWQQVSISQNHALIAPFRKGVTIDEDIVNSMANRLKCQARKLPFL
YLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSRR