; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G12140 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G12140
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionKeratin, type I cytoskeletal 10-like
Genome locationClcChr02:23854643..23856542
RNA-Seq ExpressionClc02G12140
SyntenyClc02G12140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039074.1 keratin, type I cytoskeletal 10-like [Cucumis melo var. makuwa]2.7e-0861.11Show/hide
Query:  KRDVPLFDMRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL
        +RD+PLF MRL KLE+P FKGE  E+     H VERYFVVN+L+++DKL+A VL
Subjt:  KRDVPLFDMRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL
TYJ97047.1 aminoacyl-tRNA ligase [Cucumis melo var. makuwa]1.5e-0665.22Show/hide
Query:  MRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL
        MRLRKLE+P FKGE  +   G  HRVERYF+VN+L++KDKLD  VL
Subjt:  MRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL
XP_038904464.1 uncharacterized protein LOC120090832 [Benincasa hispida]5.1e-2350Show/hide
Query:  GMEARVDQRFNELQQVTENSLAVRFEAMGETTHRNQQRE-----------PADDRSSTEK---------------EKRDVPLFDMRLRKLEIPFFKGEIG
        GME R+DQRF E+QQ+TE+ +  + EA+GET  +   R               +  S+EK               E+R+V LFDMRLRKLEIP FKGEIG
Subjt:  GMEARVDQRFNELQQVTENSLAVRFEAMGETTHRNQQRE-----------PADDRSSTEK---------------EKRDVPLFDMRLRKLEIPFFKGEIG

Query:  EDPLGSFHRVERYFVVNQLSKKDKLDATVL
        EDP+G FHRVERYFVVN+LS+KDK++A +L
Subjt:  EDPLGSFHRVERYFVVNQLSKKDKLDATVL
TrEMBL top hitse value%identityAlignment
A0A0V0ITS5 Putative ovule protein3.4e-0433.9Show/hide
Query:  INGMEARVDQRFNELQQVTEN--SLAVRFEAMGETTHRNQ--------QREPADDRSSTEKEKRDVPLF-----DMRLRKLEIPFFKGEIGEDPLGSFHR
        ++ ME RV+Q    L  V E+   L   F+ M ET  R +        +  P+  RSS  K++  +  +       + R+L++P F+   GEDPLG  +R
Subjt:  INGMEARVDQRFNELQQVTEN--SLAVRFEAMGETTHRNQ--------QREPADDRSSTEKEKRDVPLF-----DMRLRKLEIPFFKGEIGEDPLGSFHR

Query:  VERYFVVNQLSKKDKLDA
        VERYF VN++S+ ++L A
Subjt:  VERYFVVNQLSKKDKLDA
A0A5A7T6F9 Keratin, type I cytoskeletal 10-like1.3e-0861.11Show/hide
Query:  KRDVPLFDMRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL
        +RD+PLF MRL KLE+P FKGE  E+     H VERYFVVN+L+++DKL+A VL
Subjt:  KRDVPLFDMRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL
A0A5D3BD43 Aminoacyl-tRNA ligase7.2e-0765.22Show/hide
Query:  MRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL
        MRLRKLE+P FKGE  +   G  HRVERYF+VN+L++KDKLD  VL
Subjt:  MRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGAAAGGAGTAATGATGTTGTAGCCGATGGTGAAGGAGACTTGTCGAAGAGGTCCGATGTGATAGGTACAAGCTGGCATGTGGAGAAGGTCAAAAAAGTACT
TGATCTTGATGGGTCAGCGGAAGAAAAGGCTTTTTGTAAATGGTCTTCCCAATGGAATTGTCTTCCATCAATATTTTCAATCAATGGTATGGAAGCTCGCGTAGATCAGA
GATTCAATGAGCTACAGCAAGTGACGGAAAATTCGTTGGCGGTAAGATTTGAAGCTATGGGCGAAACAACACACCGTAACCAACAGAGGGAACCAGCCGATGATAGAAGC
TCGACAGAAAAAGAAAAGAGAGACGTACCTCTATTTGATATGCGATTAAGGAAATTGGAAATCCCCTTCTTCAAGGGAGAAATAGGTGAAGACCCGCTCGGATCGTTTCA
CCGAGTAGAACGATACTTCGTGGTCAATCAATTATCGAAGAAGGACAAGTTAGATGCTACGGTTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGGAAAGGAGTAATGATGTTGTAGCCGATGGTGAAGGAGACTTGTCGAAGAGGTCCGATGTGATAGGTACAAGCTGGCATGTGGAGAAGGTCAAAAAAGTACT
TGATCTTGATGGGTCAGCGGAAGAAAAGGCTTTTTGTAAATGGTCTTCCCAATGGAATTGTCTTCCATCAATATTTTCAATCAATGGTATGGAAGCTCGCGTAGATCAGA
GATTCAATGAGCTACAGCAAGTGACGGAAAATTCGTTGGCGGTAAGATTTGAAGCTATGGGCGAAACAACACACCGTAACCAACAGAGGGAACCAGCCGATGATAGAAGC
TCGACAGAAAAAGAAAAGAGAGACGTACCTCTATTTGATATGCGATTAAGGAAATTGGAAATCCCCTTCTTCAAGGGAGAAATAGGTGAAGACCCGCTCGGATCGTTTCA
CCGAGTAGAACGATACTTCGTGGTCAATCAATTATCGAAGAAGGACAAGTTAGATGCTACGGTTTTGTGA
Protein sequenceShow/hide protein sequence
MSVERSNDVVADGEGDLSKRSDVIGTSWHVEKVKKVLDLDGSAEEKAFCKWSSQWNCLPSIFSINGMEARVDQRFNELQQVTENSLAVRFEAMGETTHRNQQREPADDRS
STEKEKRDVPLFDMRLRKLEIPFFKGEIGEDPLGSFHRVERYFVVNQLSKKDKLDATVL