CuGenDBv2

Gene ID	Clc02G12250
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Beta-galactosidase
Genome location	ClcChr02:23899647..23900033
RNA-Seq Expression	Clc02G12250
Synteny	Clc02G12250
Gene Ontology terms	GO:0000723 - telomere maintenance (biological process) GO:0006303 - double-strand break repair via nonhomologous end joining (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0043564 - Ku70:Ku80 complex (cellular component) GO:0003678 - DNA helicase activity (molecular function) GO:0003684 - damaged DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0005525 - GTP binding (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0042162 - telomeric DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]

4.1e-41

72.57

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D+WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCR
        KLSL+WQEMDLCR
Subjt:  KLSLIWQEMDLCR

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]

4.1e-41

72.57

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D+WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCR
        KLSL+WQEMDLCR
Subjt:  KLSLIWQEMDLCR

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]

4.1e-41

72.57

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D+WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCR
        KLSL+WQEMDLCR
Subjt:  KLSLIWQEMDLCR

XP_038888140.1 uncharacterized protein LOC120078031 [Benincasa hispida]

5.8e-43

72.27

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        MALE R+KFGYLT EI +PRP D Q+ +WKG+DSLL S+LI+ MEPQIGKPL+Y A A DIWDAVQKLY KR+NASRLYTL+K V ECKQGTMD+T YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCRPVEVSC
        K S IWQEMDLCR +   C
Subjt:  KLSLIWQEMDLCRPVEVSC

XP_038899041.1 uncharacterized protein LOC120086450 [Benincasa hispida]

1.5e-43

71.67

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE R+KFGYLT EI KP P D QECIWKG+DSLLR +LINSME +IG+PLLY A   DIWDAVQ+LY KRQNAS+LYTLRK   +CKQGTMD+TSYFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCRPVEVSCI
        K+SL+WQEMDLCR +   C+
Subjt:  KLSLIWQEMDLCRPVEVSCI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SM64 Beta-galactosidase

2.0e-41

72.57

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D+WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCR
        KLSL+WQEMDLCR
Subjt:  KLSLIWQEMDLCR

A0A5A7UGB2 Beta-galactosidase

2.0e-41

72.57

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D+WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCR
        KLSL+WQEMDLCR
Subjt:  KLSLIWQEMDLCR

A0A5A7V0Y9 Beta-galactosidase

2.0e-41

72.57

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D+WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCR
        KLSL+WQEMDLCR
Subjt:  KLSLIWQEMDLCR

A0A5D3BJK7 Beta-galactosidase

2.0e-41

72.57

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D+WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCR
        KLSL+WQEMDLCR
Subjt:  KLSLIWQEMDLCR

A0A5D3C4T4 Beta-galactosidase

2.0e-41

72.57

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Query:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN
        M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D+WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFN
Subjt:  MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFN

Query:  KLSLIWQEMDLCR
        KLSL+WQEMDLCR
Subjt:  KLSLIWQEMDLCR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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atggcacttgagaggcgttacaagttcgggtatctaacttgtgagatattgaaacccagaccaagggattctcaagaatgcatttggaaaggaaaggactccctacttcg
atcactgctgattaacagtatggaacctcagatagggaaaccactgttgtatactgcaattgctctagacatctgggatgcagttcagaaattatactttaagagacaga
atgcatctcgtctttacaccttgcgaaaacatgttcctgagtgcaaacaaggaacaatggatgttacttcatattttaacaaattgtcccttatttggcaggaaatggat
ctgtgtcgccctgtggaggtgtcctgtattctaaaattgaggaagttgaccgtgtga

mRNA sequence

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Protein sequence

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MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMD
LCRPVEVSCILKLRKLTV

Clc02G12250 (gene) of Watermelon (cordophanus) v2 genome