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Clc02G12890 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G12890
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVQ domain-containing protein
Genome locationClcChr02:24822032..24822394
RNA-Seq ExpressionClc02G12890
SyntenyClc02G12890
Gene Ontology termsNA
InterPro domainsIPR008889 - VQ
IPR039610 - VQ motif-containing protein 29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045761.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa]1.1e-2463.46Show/hide
Query:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPP----------------HNGYLGQS
        MEPHSFSF+Y+    +V K  KKAVAPPRPT PQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMP PRPN+++                   H  +LGQS
Subjt:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPP----------------HNGYLGQS

Query:  AERY
        +ERY
Subjt:  AERY

KAA8522582.1 hypothetical protein F0562_013057 [Nyssa sinensis]1.7e-0966.67Show/hide
Query:  KPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLS
        KP KK +AP  PT P++YKVD +NFR+VVQKLTAAPEFQ RRLQ++  P  NLS
Subjt:  KPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLS

KAE8651906.1 hypothetical protein Csa_006780 [Cucumis sativus]1.8e-2265.31Show/hide
Query:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNL----SNPPPHNG------YLGQSAERY
        MEPHSFSF+Y      V K  KK VAPPRP+ PQVYKVDPINFRDVVQKLTAAP+FQDRRLQAMP PRP+L    S P   +G      +LGQS+ RY
Subjt:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNL----SNPPPHNG------YLGQSAERY

KAG6605217.1 hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia]7.0e-1966.67Show/hide
Query:  MEPH-------SFSFHYSQPEQAVHKPS----KKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPP
        MEPH       SFSF+YS P+  VHK S    KKAVAPP P  P+VYKV+PI FRDVVQKLT+ PE+ D RL+AMPAPRPNLSNPPP
Subjt:  MEPH-------SFSFHYSQPEQAVHKPS----KKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPP

XP_022149539.1 VQ motif-containing protein 29 [Momordica charantia]2.8e-1560.22Show/hide
Query:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPPHNG----YLGQSAERYY
        MEPHS S   S P     KP  +AVAP  PT PQ+YKV+P++FRDVVQKLTAAPEFQDRRLQAMPAPRP   +PPP +     + G+ A  YY
Subjt:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPPHNG----YLGQSAERYY

TrEMBL top hitse value%identityAlignment
A0A0A0LPS3 VQ domain-containing protein8.4e-1867.07Show/hide
Query:  VHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNL----SNPPPHNG------YLGQSAERY
        V K  KK VAPPRP+ PQVYKVDPINFRDVVQKLTAAP+FQDRRLQAMP PRP+L    S P   +G      +LGQS+ RY
Subjt:  VHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNL----SNPPPHNG------YLGQSAERY

A0A2N9FPV7 VQ domain-containing protein1.4e-0952.7Show/hide
Query:  PHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPP
        P  F+       +   KP KK VAP  PT P++YKVDPINFRD+VQKLT A EFQ +RLQ++  P  N+SN  P
Subjt:  PHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPP

A0A5A7TW54 VQ motif-containing protein 295.4e-2563.46Show/hide
Query:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPP----------------HNGYLGQS
        MEPHSFSF+Y+    +V K  KKAVAPPRPT PQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMP PRPN+++                   H  +LGQS
Subjt:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPP----------------HNGYLGQS

Query:  AERY
        +ERY
Subjt:  AERY

A0A5J4ZYQ3 VQ domain-containing protein8.4e-1066.67Show/hide
Query:  KPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLS
        KP KK +AP  PT P++YKVD +NFR+VVQKLTAAPEFQ RRLQ++  P  NLS
Subjt:  KPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLS

A0A6J1D7B4 VQ motif-containing protein 291.3e-1560.22Show/hide
Query:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPPHNG----YLGQSAERYY
        MEPHS S   S P     KP  +AVAP  PT PQ+YKV+P++FRDVVQKLTAAPEFQDRRLQAMPAPRP   +PPP +     + G+ A  YY
Subjt:  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPPHNG----YLGQSAERYY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22880.1 VQ motif-containing protein8.9e-0436.92Show/hide
Query:  HSFSFHYSQPEQAVHKPSKKAVAP-PRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAP
        H+ S H ++ + A  KP KK V   P+   P+VY+V+P+NF+++VQ+LT A + +    Q    P
Subjt:  HSFSFHYSQPEQAVHKPSKKAVAP-PRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAP

AT4G37710.1 VQ motif-containing protein4.0e-0440.74Show/hide
Query:  QPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMP
        QP + + +P+    +P  P  P VY+V+P+NF+ +VQ+LT APE +   +QA P
Subjt:  QPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCTCACTCCTTTTCTTTTCACTACTCCCAGCCGGAGCAGGCCGTTCACAAGCCGTCGAAGAAGGCGGTGGCGCCTCCGCGGCCGACGCAGCCCCAGGTTTATAA
GGTGGACCCCATCAACTTCCGGGATGTTGTTCAGAAGCTAACGGCGGCTCCTGAGTTTCAAGATCGCCGCCTTCAAGCCATGCCGGCTCCACGGCCCAATCTCTCCAATC
CGCCGCCTCACAATGGGTACTTGGGACAGTCCGCTGAGAGATATTACCATAATTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAGAAAAATCTCTGGTCTTCTAATTATCCACATGGAACCTCACTCCTTTTCTTTTCACTACTCCCAGCCGGAGCAGGCCGTTCACAAGCCGTCGAAGAAGGCG
GTGGCGCCTCCGCGGCCGACGCAGCCCCAGGTTTATAAGGTGGACCCCATCAACTTCCGGGATGTTGTTCAGAAGCTAACGGCGGCTCCTGAGTTTCAAGATCGCCGCCT
TCAAGCCATGCCGGCTCCACGGCCCAATCTCTCCAATCCGCCGCCTCACAATGGGTACTTGGGACAGTCCGCTGAGAGATATTACCATAATTAAATTATTGGAGCTTCAT
TTTATTTCTCTTCTTTGATAATTTATTCATAAG
Protein sequenceShow/hide protein sequence
MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPPHNGYLGQSAERYYHN