; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G12980 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G12980
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibonuclease H
Genome locationClcChr02:24905729..24906721
RNA-Seq ExpressionClc02G12980
SyntenyClc02G12980
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.5e-13673.8Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNG+QF NS+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEVYTNGAYKIVDQDGLRIGPINGKFLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]5.5e-13673.8Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNG+QF NS+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEVYTNGAYKIVDQDGLRIGPINGKFLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.5e-13673.8Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNG+QF NS+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEVYTNGAYKIVDQDGLRIGPINGKFLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.5e-13673.8Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNG+QF NS+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEVYTNGAYKIVDQDGLRIGPINGKFLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]5.5e-13673.8Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNG+QF NS+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEVYTNGAYKIVDQDGLRIGPINGKFLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H4.5e-13673.49Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNGRQF N+LMDKLCEKF FKQ+K SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLEREI SLRMAIQE LTTEDNA+LRL+ELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEV+TNGAYKI+DQDGLRIGPING+FLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

A0A5A7UID6 Ribonuclease H1.9e-13473.19Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNGRQF N+LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLEREI SLRMAIQ+ LTTEDNA+LRLQELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRH GNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEV+TNGAYKI+DQDGLRIGPING+FLK+F A
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

A0A5A7UZS6 Ribonuclease H1.9e-13472.89Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP E WGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNGRQF N+LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLE+EI SLRM+IQE LTT+DNA+L LQELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEV+TNGAYKI+DQDGLRIGPINGKFLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

A0A5D3BTY1 Ribonuclease H1.9e-13472.89Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP E WGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNGRQF N+LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLE+EI SLRM+IQE LTT+DNA+L LQELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEV+TNGAYKI+DQDGLRIGPINGKFLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

A0A5D3D1E5 Ribonuclease H2.7e-13673.8Show/hide
Query:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------
        MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL                                                  
Subjt:  MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL--------------------------------------------------

Query:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE
                   DNGRQF N+LMDKLCEKF FKQ+K SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAYRTTHRTPTGVTPYSLVYGVE
Subjt:  -----------DNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVE

Query:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV
        AVLPLEREI SLRMAIQE LTTEDNA+LRLQELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Subjt:  AVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV

Query:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
        KEV+TNGAYKI+DQDGL+IGPINGKFLK+FYA
Subjt:  KEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

SwissProt top hitse value%identityAlignment
A4FUB7 Gypsy retrotransposon integrase-like protein 13.5e-0824.56Show/hide
Query:  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLEREIS
        +D   +F++ +  +LCE F  KQ   S  +   N  AE+   T+   L K       DW + +  V +A+  TH  PT  TPY  ++     +P   E S
Subjt:  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLEREIS

Query:  SLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALE---CYQARMSKAF----DKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVVKEV
         +R    +  +        ++E + + E +  +   +E   C++   SK       K   P   ++G  VL  R+          +F  +W GP V+  +
Subjt:  SLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALE---CYQARMSKAF----DKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVVKEV

Query:  YTNGAYKIVDQDGLRI-GPINGKFLKRF
          NG   + D  G R+  PI    LK +
Subjt:  YTNGAYKIVDQDGLRI-GPINGKFLKRF

Q5RBK0 Gypsy retrotransposon integrase-like protein 12.3e-0421.3Show/hide
Query:  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLP------
        +D   +F+  +  +L   F  KQ   S  + + N   E+   T+   L K  +    +W + +  V +A+  TH  PT  TPY  ++     +P      
Subjt:  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLP------

Query:  --LEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQAR-MSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVVK
          ++ + +S+   I + +   D    ++ E +     ++E     E  +++ + K   K + P   ++G  VL  R+          +F  +W GP V+ 
Subjt:  --LEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQAR-MSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVVK

Query:  EVYTNGAYKIVDQDGLRI-GPINGKFLKRF
         +  +G   + D  G+R+  PI    LK +
Subjt:  EVYTNGAYKIVDQDGLRI-GPINGKFLKRF

Q9NXP7 Gypsy retrotransposon integrase-like protein 13.0e-0421.3Show/hide
Query:  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLP------
        +D   +F+  +  +L   F  KQ   S  +   N   E+   T+   L K  +    +W + +  V +A+  TH  PT  TPY  ++     +P      
Subjt:  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLP------

Query:  --LEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQAR-MSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVVK
          ++ + +S+   I + +   D    ++ E +     ++E     E  +++ + K   K + P   ++G  VL  R+          +F  +W GP V+ 
Subjt:  --LEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQAR-MSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVVK

Query:  EVYTNGAYKIVDQDGLRI-GPINGKFLKRF
         +  +G   + D  G+R+  PI    LK +
Subjt:  EVYTNGAYKIVDQDGLRI-GPINGKFLKRF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTATTATTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCAAAGCCTCTTCA
CCCGACAGTAGCTTCCTGGCCATTAGAAGCTTGGGGACTTGATAATGGAAGACAGTTTGTTAATAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAACAGTACA
AGTATTCTATGTACAATGCTGCAGCAAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCCAAGACGAAAAGAGATTGGCAGGAA
AAGATCGAGGAAGTCCTATGGGCTTACCGAACTACCCATCGCACCCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTGGAAGCCGTTCTCCCATTAGAGAGGGA
AATTTCATCACTCAGAATGGCGATTCAAGAAGAATTAACTACTGAAGACAATGCCAAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAAGCTCAAC
AGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCATTTCAGATTGGTGATTTAGTACTTGCTGTAAGAAGACCTATCATC
ACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAG
AATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCTATTATTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCAAAGCCTCTTCA
CCCGACAGTAGCTTCCTGGCCATTAGAAGCTTGGGGACTTGATAATGGAAGACAGTTTGTTAATAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAACAGTACA
AGTATTCTATGTACAATGCTGCAGCAAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCCAAGACGAAAAGAGATTGGCAGGAA
AAGATCGAGGAAGTCCTATGGGCTTACCGAACTACCCATCGCACCCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTGGAAGCCGTTCTCCCATTAGAGAGGGA
AATTTCATCACTCAGAATGGCGATTCAAGAAGAATTAACTACTGAAGACAATGCCAAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAAGCTCAAC
AGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCATTTCAGATTGGTGATTTAGTACTTGCTGTAAGAAGACCTATCATC
ACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAG
AATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCTTAG
Protein sequenceShow/hide protein sequence
MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGLDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQE
KIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPII
TTRHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA