CuGenDBv2

Gene ID	Clc02G13030
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Ty3-gypsy retrotransposon protein
Genome location	ClcChr02:24912419..24914887
RNA-Seq Expression	Clc02G13030
Synteny	Clc02G13030
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042128.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.1e-34

67.21

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G+VIKENPT+D+H S  ER NEEASQPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+ IA  KNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

2.1e-34

66.39

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   F++A+NIWE+IS+  K G+VIKENP +D+H S SER NEE  QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+EIA LKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.8e-34

66.39

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   FE+ +NIWE+IS+  K G+VIKENP +D+H S SER NEE  QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+EIA LKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

8.6e-36

68.85

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   FE+A NIWE+IS+  K G+VIKENP +D+H S SER NEEA QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+EIASLKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
        +ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]

2.1e-34

67.21

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G+VIKENPT+D+H S  ER NEEASQPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+ IA  KNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TH26 Ty3-gypsy retrotransposon protein

1.0e-34

67.21

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G+VIKENPT+D+H S  ER NEEASQPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+ IA  KNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

A0A5A7TZU9 Ribonuclease H

1.0e-34

66.39

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   F++A+NIWE+IS+  K G+VIKENP +D+H S SER NEE  QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+EIA LKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

A0A5A7U5H1 Ty3-gypsy retrotransposon protein

1.3e-34

66.39

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   FE+ +NIWE+IS+  K G+VIKENP +D+H S SER NEE  QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+EIA LKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

A0A5A7U9H0 Ty3-gypsy retrotransposon protein

4.2e-36

68.85

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   FE+A NIWE+IS+  K G+VIKENP +D+H S SER NEEA QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+EIASLKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
        +ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

A0A5D3D1E5 Ribonuclease H

1.0e-34

67.21

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Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G+VIKENPT+D+H S  ER NEEASQPN+MSVM  DV TSE+RMAELEKKVNML+KAVEE D+ IA  KNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCAGTCGGAAGAGCAACTTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCTGAAAGTTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAA
GCATACCTCGGCTTCTGAACGACCGAACGAGGAGGCATCCCAACCAAACGTAATGTCAGTCATGACGGCCGACGTGGGAACAAGTGAAGAGAGGATGGCTGAACTTGAAA
AGAAAGTTAACATGCTACTGAAGGCAGTCGAAGAAATAGATTATGAGATCGCATCCCTCAAGAATCATATTGAGAGTCGTGATGCGGTTGAATCAAGTCATACACCTGCC
GTCAAGAACAATGACAAAGAGAAGAAGGCTTTGCAAGATAGTTAG

mRNA sequence

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Protein sequence

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MQSEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEEIDYEIASLKNHIESRDAVESSHTPA
VKNNDKEKKALQDS

Clc02G13030 (gene) of Watermelon (cordophanus) v2 genome