; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G13060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G13060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr02:24934248..24934457
RNA-Seq ExpressionClc02G13060
SyntenyClc02G13060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038882351.1 uncharacterized protein LOC120073613 [Benincasa hispida]7.7e-1873.77Show/hide
Query:  FLVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQR
        FL+HNLITR+MGIGAMLD+ D +NSASV ++GDHIEFVES +EWTKF DDLA+++FT+WQR
Subjt:  FLVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQR

XP_038885566.1 uncharacterized protein LOC120075895 [Benincasa hispida]7.7e-1873.77Show/hide
Query:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA
        L+HNLITR+MGIG ML+V D ENSASVG++GDHIEFVES +EW KF+DDL ++MFT+WQRA
Subjt:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA

XP_038886674.1 putative nuclease HARBI1 [Benincasa hispida]2.6e-2183.87Show/hide
Query:  FLVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA
        FL+HNLITR+MGIGAMLDV D ENSASVG++GDHIEFVESS EWTKF+DDLA+EMFT WQRA
Subjt:  FLVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA

XP_038889345.1 putative nuclease HARBI1 [Benincasa hispida]4.5e-1875.41Show/hide
Query:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA
        L+HNLI R+MGI A+ D+ D ENSASVG++GDHIEFVESS EWTKF+DDLA+EMFT+WQRA
Subjt:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA

XP_038895742.1 protein ALP1-like [Benincasa hispida]5.3e-1977.05Show/hide
Query:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA
        L+HNLIT+KMGI AM DV D ENSA VG++GDHIEF+ESS+EWTKF+DDLA+EMFT+WQRA
Subjt:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA

TrEMBL top hitse value%identityAlignment
A0A1S3C2B9 uncharacterized protein LOC1034962332.1e-0544.07Show/hide
Query:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ
        L+HNLI R+M    ++D +D  +S       D I ++E+S+EWT+++DDLA EMF+EW+
Subjt:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ

A0A5A7TC28 Putative nuclease HARBI12.8e-0544.07Show/hide
Query:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ
        L+HNLI R+M    + D +D  +S  V    D I ++E+S+EW++++DDLA EMFT+W+
Subjt:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ

A0A5D3BQ11 Putative nuclease HARBI12.8e-0544.07Show/hide
Query:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ
        L+HNLI R+M    +LD +D  +S  V   GD I ++E+ +EWT+++D+LA EMF++W+
Subjt:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ

A0A5D3CQ36 Putative nuclease HARBI12.1e-0544.07Show/hide
Query:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ
        L+HNLI R+M    ++D +D  +S       D I ++E+S+EWT+++DDLA EMF+EW+
Subjt:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ

A0A5D3DMA6 Putative nuclease HARBI13.3e-0645.76Show/hide
Query:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ
        L+HNLI R+M I  ++D +D  NS       D I ++E+S+EWT+++DDLA E+F+EW+
Subjt:  LVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAACAATAACTGCATGTTCCTTGTCCACAACTTGATCACAAGGAAGATGGGAATCGGTGCAATGCTTGATGTGCTCGATTACGAGAATTCTGCATCAGTTGGAGT
TAATGGGGATCATATTGAATTTGTTGAATCCTCAGACGAATGGACAAAGTTCAAGGATGACTTGGCGATCGAAATGTTTACTGAATGGCAGAGAGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAACAATAACTGCATGTTCCTTGTCCACAACTTGATCACAAGGAAGATGGGAATCGGTGCAATGCTTGATGTGCTCGATTACGAGAATTCTGCATCAGTTGGAGT
TAATGGGGATCATATTGAATTTGTTGAATCCTCAGACGAATGGACAAAGTTCAAGGATGACTTGGCGATCGAAATGTTTACTGAATGGCAGAGAGCCTGA
Protein sequenceShow/hide protein sequence
MSNNNCMFLVHNLITRKMGIGAMLDVLDYENSASVGVNGDHIEFVESSDEWTKFKDDLAIEMFTEWQRA