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Clc02G13430 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G13430
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr02:25457647..25458125
RNA-Seq ExpressionClc02G13430
SyntenyClc02G13430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041372.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.6e-1236.46Show/hide
Query:  ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF
        + RL+AL++    +VK+ W+P TNDW++   RPL D ++ +WN IK +  APN+ +    PIWK N +G F + S + A+  +    ++   P+IF
Subjt:  ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF

KAA0047998.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.8e-0935.16Show/hide
Query:  SLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQ--HH
        SL +K  RL+AL+   + TVKE W P  NDWN  P RPL +R+   W  +K   P   +     +P+W    N ++   S ++A  +  HH
Subjt:  SLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQ--HH

KAA0056929.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0832Show/hide
Query:  LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF
        LA    RLFAL+     +VK+ W   ++DWN  P RP+   ++ +W+  +T   AP++ +    PIWK N +G+F ++S ++A+      D + ++P  F
Subjt:  LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF

TYK19715.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.4e-0936.05Show/hide
Query:  LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQ
        L+ +I RL+AL+     TVKE W   T+ WN++P RPL DR+   W +IK   P  +  + T +P W+P+ +  + V+S +E  ++
Subjt:  LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQ

TYK21646.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-1236.46Show/hide
Query:  ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF
        + RL+AL++    +VK+ W+P TNDW++   RPL D ++ +WN IK +  APN+ +    PIWK N +G F ++S + A+  +    ++   P+IF
Subjt:  ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF

TrEMBL top hitse value%identityAlignment
A0A5A7TD61 LINE-1 retrotransposable element ORF2 protein2.7e-1236.46Show/hide
Query:  ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF
        + RL+AL++    +VK+ W+P TNDW++   RPL D ++ +WN IK +  APN+ +    PIWK N +G F + S + A+  +    ++   P+IF
Subjt:  ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF

A0A5A7TYF4 LINE-1 retrotransposable element ORF2 protein4.8e-0935.16Show/hide
Query:  SLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQ--HH
        SL +K  RL+AL+   + TVKE W P  NDWN  P RPL +R+   W  +K   P   +     +P+W    N ++   S ++A  +  HH
Subjt:  SLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQ--HH

A0A5D3D823 LINE-1 retrotransposable element ORF2 protein2.1e-0936.05Show/hide
Query:  LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQ
        L+ +I RL+AL+     TVKE W   T+ WN++P RPL DR+   W +IK   P  +  + T +P W+P+ +  + V+S +E  ++
Subjt:  LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQ

A0A5D3DDJ7 LINE-1 retrotransposable element ORF2 protein1.2e-1236.46Show/hide
Query:  ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF
        + RL+AL++    +VK+ W+P TNDW++   RPL D ++ +WN IK +  APN+ +    PIWK N +G F ++S + A+  +    ++   P+IF
Subjt:  ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF

A0A5D3DS76 LINE-1 retrotransposable element ORF2 protein6.2e-0932Show/hide
Query:  LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF
        LA    RLFAL+     +VK+ W   ++DWN  P RP+   ++ +W+  +T   AP++ +    PIWK N +G+F ++S ++A+      D + ++P  F
Subjt:  LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGATCATTAGCTGAGAAAATTTCCAGACTTTTTGCACTTACACAACAAACAGACATGACCGTGAAGGAAGCTTGGCATCCCATAACAAATGATTGGAACCTGGA
CCCGCATAGACCCCTACTTGATAGGGACTTGACTGTATGGAATGCCATAAAAACACTCCATCCCGCTCCTAATGAGAGAAAATGGACATATCAACCCATATGGAAGCCAA
ACAAAAATGGCAGTTTCAGGGTCTCCTCCACCCAAGAAGCAATATATCAGCATCATCCCAGAGACTCCTCTTTGCTGAATCCTCACATTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATACAAACTTTGCTCTCTTAAGCAAATGGCTATGGAGATTCACATCTGAAGGCAATACCTAATCATCATTTCCAAATACAATCAGACCTTCATGGGAGAGATCCCCATAA
ATGGCACGATCATTAGCTGAGAAAATTTCCAGACTTTTTGCACTTACACAACAAACAGACATGACCGTGAAGGAAGCTTGGCATCCCATAACAAATGATTGGAACCTGGA
CCCGCATAGACCCCTACTTGATAGGGACTTGACTGTATGGAATGCCATAAAAACACTCCATCCCGCTCCTAATGAGAGAAAATGGACATATCAACCCATATGGAAGCCAA
ACAAAAATGGCAGTTTCAGGGTCTCCTCCACCCAAGAAGCAATATATCAGCATCATCCCAGAGACTCCTCTTTGCTGAATCCTCACATTTTTTAGGGCCTATGGAAATCC
TCAATCCTGAAAAATGTAAAAAATTTTTATAGACTACCC
Protein sequenceShow/hide protein sequence
MARSLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF