; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G13870 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G13870
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Genome locationClcChr02:26122445..26126408
RNA-Seq ExpressionClc02G13870
SyntenyClc02G13870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605258.1 hypothetical protein SDJN03_02575, partial [Cucurbita argyrosperma subsp. sororia]1.1e-6980.32Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSD  D+DSDAPEEFTAEQG+QQDEEIRKVQKES AR          VVREGKERRR WAEKKTPR SKKGE VED+AE PR NDQ+ KLGMLPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        L +REKQVF SDPGDEKPA K K KRKK+KSSGI+TVLL+ER PSQCLQNSLEFLKKRKMNI RSSSVLDN NQALRLLS+SGLLTKK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

KAG7035221.1 hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-7080.85Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSD  D+DSDAPEEFTAEQG+QQDEEIRKVQKES AR          VVREGKERRR WAEKKTPR SKKGE VED+AE PR NDQ+ KLGMLPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        L +REKQVF SDPGDEKPA K K KRKK+KSSGIETVLL+ER PSQCLQNSLEFLKKRKMNI RSSSVLDN NQALRLLS+SGLLTKK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

XP_004148046.1 uncharacterized protein LOC101208336 [Cucumis sativus]3.8e-7584.57Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQKESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEPPR++D+I KLG LPSNIVQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVF SD GDEKPAIKPK KRKKTKSSGIETVLL+ERTPS CLQNSLEFLKKRKMN+ RSS+VL NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

XP_008457855.1 PREDICTED: uncharacterized protein LOC103497440 [Cucumis melo]3.5e-7383.07Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQ ESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEPPR++D++ KLG LPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTK-SSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVF SD GDEKPAIKPK KRKKTK SSGIETVLLSERTPS CLQNSLEFLKKRKMN+ RSS+VL+NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTK-SSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

XP_038901892.1 uncharacterized protein LOC120088571 [Benincasa hispida]4.7e-7889.42Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRD-NDQIIKLGMLPSNIVQ
        MSDRED+DSDAPEEFTAEQGVQQDEEIRKVQKESKAR          VVREGKERRRLWAEKKTPRPSKKGE VEDLAEPPRD +DQI KLGMLPSNIVQ
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRD-NDQIIKLGMLPSNIVQ

Query:  LLVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        LLVDREKQVF SDP DEKPAIKPK KRKKTKSSGIETVLLSERTPSQCL NSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLL KK
Subjt:  LLVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

TrEMBL top hitse value%identityAlignment
A0A0A0LM07 Uncharacterized protein1.8e-7584.57Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQKESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEPPR++D+I KLG LPSNIVQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVF SD GDEKPAIKPK KRKKTKSSGIETVLL+ERTPS CLQNSLEFLKKRKMN+ RSS+VL NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

A0A1S3C749 uncharacterized protein LOC1034974401.7e-7383.07Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQ ESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEPPR++D++ KLG LPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTK-SSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVF SD GDEKPAIKPK KRKKTK SSGIETVLLSERTPS CLQNSLEFLKKRKMN+ RSS+VL+NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTK-SSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

A0A5A7TWK6 Uncharacterized protein1.7e-7383.07Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQ ESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEPPR++D++ KLG LPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTK-SSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVF SD GDEKPAIKPK KRKKTK SSGIETVLLSERTPS CLQNSLEFLKKRKMN+ RSS+VL+NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTK-SSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

A0A6J1DXW1 uncharacterized protein LOC1110251625.7e-6979.68Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSD ED+DSDAPEEFTAEQG+QQD+EI KVQ ESKAR          VVREGKERRRLWAEKKTPRPSKKGE VED+AE P   DQ  KLGMLPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTK
        L DREKQVF SDPGDEKPA KPK KRKKTKSSGIETV+L++R P+QCLQNS+EFLKKRKMNI RSSSVLDNPNQALR LS+SGLLTK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTK

A0A6J1G7P4 uncharacterized protein LOC1114514981.1e-6980.32Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL
        MSD  D+DSDAPEEFTAEQG+QQDEEIRKVQKES AR          VVREGKERRR WAEKKTPR SKK E VED+AE PR NDQ+ KLGMLPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQL

Query:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        L +REKQVF SDPGDEKPA K K KRKK+KSSGIETVLL+ER PSQCLQNSLEFLKKRKMNI RSSSVLDN NQALRLLS+SGLLTKK
Subjt:  LVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G37090.1 unknown protein1.1e-2945.6Show/hide
Query:  MSDRE--DSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPPRDNDQIIKLGMLPS
        MSD +  DSDSDAPEE T EQ   ++E + K+Q+E+K R          V RE KERR+L AE+ T R S+K EI+ED+    EP  +++ +   G L  
Subjt:  MSDRE--DSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPPRDNDQIIKLGMLPS

Query:  NIVQLLVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        +I+  L +REKQ  ESD  +E+  I    ++KK KSSGIETV+  E  P +CL+  L+FLK R+  + RSSSV+ N  QALR L+T   L KK
Subjt:  NIVQLLVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK

AT4G37090.2 unknown protein2.8e-2845.6Show/hide
Query:  MSDRE--DSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPPRDNDQIIKLGMLPS
        MSD +  DSDSDAPEE T EQ   ++E + K+Q+E+K R          V RE KERR+L AE+ T R S+K EI+ED+    EP  +++ +   G L  
Subjt:  MSDRE--DSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPPRDNDQIIKLGMLPS

Query:  NIVQLLVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK
        +I+  L +REKQ  ESD  +E+  I    ++KK KSSGIETV+  E  P +CL+  L+FLK R+  + RSSSV+ N  QALR L+T   L KK
Subjt:  NIVQLLVDREKQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGACAGAGAAGATTCCGATTCGGACGCTCCCGAGGAGTTCACCGCCGAGCAGGGAGTACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAAG
GCCAGGTGTGTACTCAATCCGTATTTCCCATTACTGGTTGTTCGTGAAGGGAAAGAACGCCGTAGACTGTGGGCTGAAAAGAAAACACCACGCCCATCTAAAAAG
GGTGAAATTGTCGAAGATTTAGCAGAACCCCCTAGAGATAATGATCAAATTATCAAGTTGGGAATGCTTCCTAGCAATATTGTCCAACTGCTTGTAGACCGTGAG
AAACAAGTTTTCGAATCAGATCCGGGTGACGAAAAGCCTGCAATTAAGCCAAAACTAAAGCGGAAGAAAACCAAAAGCTCTGGGATTGAAACGGTTCTCTTAAGC
GAAAGAACACCATCTCAATGTTTACAGAACTCCTTGGAATTTTTGAAGAAAAGGAAGATGAATATTACAAGATCATCATCGGTTCTTGATAATCCTAACCAAGCG
TTACGGCTTCTTTCTACATCTGGCTTACTAACTAAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
CAAAACTTCCTCTGTTCGGTGTTTCTTCAAAACTTCACATAAACCCTAAAAAGTGAGTTGGGTTCAGATGTCGGACAGAGAAGATTCCGATTCGGACGCTCCCGA
GGAGTTCACCGCCGAGCAGGGAGTACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCCAGGTGTGTACTCAATCCGTATTTCCCATTACTGGT
TGTTCGTGAAGGGAAAGAACGCCGTAGACTGTGGGCTGAAAAGAAAACACCACGCCCATCTAAAAAGGGTGAAATTGTCGAAGATTTAGCAGAACCCCCTAGAGA
TAATGATCAAATTATCAAGTTGGGAATGCTTCCTAGCAATATTGTCCAACTGCTTGTAGACCGTGAGAAACAAGTTTTCGAATCAGATCCGGGTGACGAAAAGCC
TGCAATTAAGCCAAAACTAAAGCGGAAGAAAACCAAAAGCTCTGGGATTGAAACGGTTCTCTTAAGCGAAAGAACACCATCTCAATGTTTACAGAACTCCTTGGA
ATTTTTGAAGAAAAGGAAGATGAATATTACAAGATCATCATCGGTTCTTGATAATCCTAACCAAGCGTTACGGCTTCTTTCTACATCTGGCTTACTAACTAAGAA
GTAACAGTTTTGTTTCAAAGTCTATTTACTGCATCTCTGTTAGCTTCGACAGGACAATGTATAATGTACTTGAAAATTGGTTGCTAAGAGCAAAAAAGTTTCCGA
CCATAGCAGAAATTGAAAATGGTGAGAGCATTAATGTTGGTAAATTAATGATTTTTATTATGTTGTTTCTACCACCAGGGGCTCGTCTTTGAATACGTTTAAATT
TAAAGAAATCATTTACCTGACAA
Protein sequenceShow/hide protein sequence
MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLLVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRDNDQIIKLGMLPSNIVQLLVDRE
KQVFESDPGDEKPAIKPKLKRKKTKSSGIETVLLSERTPSQCLQNSLEFLKKRKMNITRSSSVLDNPNQALRLLSTSGLLTKK