CuGenDBv2

Gene ID	Clc02G14120
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Upstream activation factor subunit UAF30-like
Genome location	ClcChr02:26461549..26477761
RNA-Seq Expression	Clc02G14120
Synteny	Clc02G14120
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	IPR003121 - SWIB/MDM2 domain IPR014876 - DEK, C-terminal IPR019835 - SWIB domain IPR036885 - SWIB/MDM2 domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK13709.1 upstream activation factor subunit UAF30-like [Cucumis melo var. makuwa]

2.5e-134

90.24

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELIGRLR+FLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHE+ VEE  G CEEV+QE GDENLK E +DGDSEDGDNDDED
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGK  SDK  K      GGGFSKLCSLSPQLQEFIGA EMARTEVV+QLWNHIRENNLQDPSNRRNILCDE LKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQS
        ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSARE+KRQKKGKSGFLAPL LSDAL+ FLGTGEDALPRSDVVKRMWDYIKQNNLQ+
Subjt:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQS

XP_008457882.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]

4.2e-134

90.54

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELIGRLR+FLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHE+ VEE  G CEEV+QE GDENLK E +DGDSEDGDNDDED
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGK  SDK  K      GGGFSKLCSLSPQLQEFIGA EMARTEVV+QLWNHIRENNLQDPSNRRNILCDE LKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ
        ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSARE+KRQKKGKSGFLAPL LSDAL+ FLGTGEDALPRSDVVKRMWDYIKQNNLQ
Subjt:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ

XP_038901460.1 upstream activation factor subunit spp27-like isoform X1 [Benincasa hispida]

1.1e-145

95.61

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVD+FLQTEHER VEE CGDCEEVDQE GDENLKTE DDGDSEDGDNDDED
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGKAGS+KLSKEGK+RGGGGFSKLCSLSPQLQEFIGAPEMARTEVV+QLWNHIR  NLQDPSNRRNILCD+SLKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ
        ESNDVIPA SSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDAL+TFLGTGEDALPRSDVVKRMWDYIKQNNLQ
Subjt:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ

XP_038901461.1 protein TRI1-like isoform X2 [Benincasa hispida]

1.1e-145

95.61

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVD+FLQTEHER VEE CGDCEEVDQE GDENLKTE DDGDSEDGDNDDED
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGKAGS+KLSKEGK+RGGGGFSKLCSLSPQLQEFIGAPEMARTEVV+QLWNHIR  NLQDPSNRRNILCD+SLKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ
        ESNDVIPA SSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDAL+TFLGTGEDALPRSDVVKRMWDYIKQNNLQ
Subjt:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ

XP_038901462.1 protein TRI1-like isoform X3 [Benincasa hispida]

1.1e-145

95.61

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVD+FLQTEHER VEE CGDCEEVDQE GDENLKTE DDGDSEDGDNDDED
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGKAGS+KLSKEGK+RGGGGFSKLCSLSPQLQEFIGAPEMARTEVV+QLWNHIR  NLQDPSNRRNILCD+SLKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ
        ESNDVIPA SSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDAL+TFLGTGEDALPRSDVVKRMWDYIKQNNLQ
Subjt:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJW7 Uncharacterized protein

5.2e-130

87.84

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELI RLR+FLRNSDLNTTTTAIVRRKLEEDFGIDLSDKK FIREQVDLFLQTEHE+ V+E    CEEV QE GDENLK E +DGDSEDGDND+ED
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGK  S+K+ K      GGGF+KLCSLSPQLQEFIGAPEMARTEVV+QLWNHIRENNLQDPSNRRNILCDE LKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ
        ESNDVIPAKSSQKEK QKEKQPKEKPQKKRQKQGKEEDSDDSARE+KRQKKGKSGFLAPL LS+AL+ FLGTGEDALPRSDVVKRMWDYIKQNNLQ
Subjt:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ

A0A1S3C766 upstream activation factor subunit UAF30-like

2.0e-134

90.54

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELIGRLR+FLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHE+ VEE  G CEEV+QE GDENLK E +DGDSEDGDNDDED
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGK  SDK  K      GGGFSKLCSLSPQLQEFIGA EMARTEVV+QLWNHIRENNLQDPSNRRNILCDE LKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ
        ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSARE+KRQKKGKSGFLAPL LSDAL+ FLGTGEDALPRSDVVKRMWDYIKQNNLQ
Subjt:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ

A0A5D3CU37 Upstream activation factor subunit UAF30-like

1.2e-134

90.24

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELIGRLR+FLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHE+ VEE  G CEEV+QE GDENLK E +DGDSEDGDNDDED
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGK  SDK  K      GGGFSKLCSLSPQLQEFIGA EMARTEVV+QLWNHIRENNLQDPSNRRNILCDE LKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQS
        ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSARE+KRQKKGKSGFLAPL LSDAL+ FLGTGEDALPRSDVVKRMWDYIKQNNLQ+
Subjt:  ESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQS

A0A6J1EMX5 upstream activation factor subunit UAF30-like

2.7e-131

88.7

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELI RLREFLR+SDLN TTTAIVRRKLEE FG+DLSDKKRFIREQVDLFLQTEHER  EE  GDCEE DQE GDENLKTE +DGDSEDGDNDD D
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
        DEKGK GS+KL+   K+RGGGGFSKLCSLSPQLQEFIG PEMARTEVV+QLWNHIR NNLQDPSNRRNILCDESLKALF V+SINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEKQQ-----KEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNL
        ESNDVIPAKSSQKEKQQ     KEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDAL+TFLGTGE AL RSDVVKRMWDYIKQNNL
Subjt:  ESNDVIPAKSSQKEKQQ-----KEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNL

Query:  Q
        Q
Subjt:  Q

A0A6J1I6I7 upstream activation factor subunit spp27-like

6.3e-128

87.04

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED
        MVSDSELI RLREFLR+SDLN TTTAIVRRKLEE FG+DLSDKKRFIREQVDLFLQTEHER  EE  GDCEE DQE GDENLKTE +DGDSEDGDND  D
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHER-VEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDED

Query:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL
         EKGK GS+KL+   K+RGGGGFSKLCSLSPQLQEFIG PEMARTEVV+QLWNHIR NNLQDPSNRRNILCDESLKALF V+SINMFQMNKALSKHIWPL
Subjt:  DEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQK-----EKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNL
        ESNDVIPAKSSQK     EKQ+KEKQPKEK QKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDAL+TFLGTGE++L RSDVVKRMWDYIKQNNL
Subjt:  ESNDVIPAKSSQK-----EKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNL

Query:  Q
        Q
Subjt:  Q

SwissProt top hits

e value

%identity

Alignment

O74503 Upstream activation factor subunit spp27

2.2e-08

26.82

Show/hide

Query:  LREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENLK-TEPDDGDSEDGDNDDEDDEKGKAGSDK
        +++ L   D  T +   VR+ LEE   +DLS  K+ +     L L+   E    A  + E ++++A     K     +  +E+G    +   K K   ++
Subjt:  LREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENLK-TEPDDGDSEDGDNDDEDDEKGKAGSDK

Query:  LSKEGKRR--GGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLESNDVIPA
          K  + +       +K   LSP+L EF+G  +++R + V++LW +I+ ++LQDP+++R ILCD+ LK++F V++++MF MNK L+  +  +  + +   
Subjt:  LSKEGKRR--GGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLESNDVIPA

Query:  KSSQKEKQQKEKQPKEKPQK
        +   +E       PK++ ++
Subjt:  KSSQKEKQQKEKQPKEKPQK

Q05024 Protein TRI1

6.1e-11

30.85

Show/hide

Query:  VRRKLEEDFGIDLSDKKRFIREQVDLFLQ-----TEHERVEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDEDDEKGKAGSDKLSKEGKRRGGGGF
        VR+ L+  + ++L  +++ I E   L L+      E+ RV     D    DQE    +L+ + ++      +       K K  S+  SK  K++     
Subjt:  VRRKLEEDFGIDLSDKKRFIREQVDLFLQ-----TEHERVEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDEDDEKGKAGSDKLSKEGKRRGGGGF

Query:  SKLCS-----LSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQK
        S   S     LS  LQ+F+G+ E+ RT+VV+ +W +I+E++LQ+P +RR ILCDE ++ +FG   + MF MNK L+KH++    ++++  +  QK+  +K
Subjt:  SKLCS-----LSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQK

Query:  E
        E
Subjt:  E

Q08747 Upstream activation factor subunit UAF30

3.3e-09

32.09

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Query:  LRNSDLNTTTTAIVRRKLEEDFGIDLSDK----KRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDEDDEKGKAGSDKL
        L + DL T TT  VR  L+E + ID+  +     + IR+ +DL    E  R E +    E++ +E     ++   +   S+    ++++D + K G+   
Subjt:  LRNSDLNTTTTAIVRRKLEEDFGIDLSDK----KRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDEDDEKGKAGSDKL

Query:  SKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAKSS
         K+G        ++  +LS  L   +G  E+ RTEVVR+LW +I+ +NLQ+P+N++ ILCDE L+ + G  S NMF+M+K L+ H+         P K S
Subjt:  SKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAKSS

Query:  QKEKQQKEKQPKEKP
              +E + KEKP
Subjt:  QKEKQQKEKQPKEKP

Arabidopsis top hits

e value

%identity

Alignment

AT1G49520.1 SWIB complex BAF60b domain-containing protein

1.7e-53

45.66

Show/hide

Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDEDD
        MVSDS+L+ +LRE LR+SDL TTT A VRR+LE  FG++L+DKK F+REQ+D FL  E + + E+  + EE D   GD+N        D E  +NDD+  
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDEDD

Query:  EKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLE
        E        L  + K+R GGGF+K+C LSPQL++F+G  ++ARTEVV+++W +IRE++LQDP+NRRNILCDESL +LF V +INMFQMNKAL+KHIW L 
Subjt:  EKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLE

Query:  SNDVI-------PAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKS---------GFLAPLQLSDALMTFLGTGEDALPRSDVVKR
          D             +  E+ +K+ + +E  +   ++  +EED     R+ K++K  KS         GF     LS  L  F GT +  L R++VVK 
Subjt:  SNDVI-------PAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKS---------GFLAPLQLSDALMTFLGTGEDALPRSDVVKR

Query:  MWDYIKQNNLQ
        +W YIK+NNLQ
Subjt:  MWDYIKQNNLQ

AT2G14880.1 SWIB/MDM2 domain superfamily protein

2.5e-12

39.47

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Query:  GFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALF-GVNSINMFQMNKALSKH
        G  K   +SP++Q+ +  PE+ART+ ++++W +I+E++LQDP N+R ILCDE LK +F G + +   ++ K +  H
Subjt:  GFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALF-GVNSINMFQMNKALSKH

AT2G35605.1 SWIB/MDM2 domain superfamily protein

2.3e-13

43.01

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Query:  KAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALF-GVNSINMFQMNKALSKH
        KA S   +K G  R G G  K+  +S  L  FIG  E++RT  V+++W +I+ NNLQ+P N+R ILCDE LK +F G +++   +++K LS+H
Subjt:  KAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALF-GVNSINMFQMNKALSKH

AT3G19080.1 SWIB complex BAF60b domain-containing protein

1.8e-50

44.52

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Query:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDEDD
        MVSD +L+ RLRE L +SDLNT T A VRR+LE DFG+DL+DKK +IR+Q+D FL  E     E   +  +V++    + +K E + GD ED D D    
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENLKTEPDDGDSEDGDNDDEDD

Query:  EKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLE
        E+ K   ++   + K+R GGG +K+  LSPQL++ +GA ++ RTEVV+++W +IRE +LQDP +RR I+CDE L +LF V +INMFQMNKAL+KHIWPL 
Subjt:  EKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLE

Query:  SND-VIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDD----SAREEKRQK----------KGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRM
          D        + E +  E   K+  Q +  ++ KEE+S++    S R+ KR+K          KG  GF     LS  L  F G  E  L R++VVK +
Subjt:  SND-VIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDD----SAREEKRQK----------KGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRM

Query:  WDYIKQNNLQ
        W YIK+NNLQ
Subjt:  WDYIKQNNLQ

AT4G22360.1 SWIB complex BAF60b domain-containing protein

3.5e-30

38.46

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Query:  KRRGG-GGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAKSSQKE
        KR+GG GG +K+C +SP+L+  +G P + RTE+VRQLW +IR+NNLQDPSN+R I+CD++L+ +F  +  +MF+MNK L+KHI PL+     P+K S + 
Subjt:  KRRGG-GGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAKSSQKE

Query:  KQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ
        K+ K                    ++   + E  +    +   + + LS+ L  F GTGE  +   ++++R+W+YIK NNL+
Subjt:  KQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQNNLQ

Sequences

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CDS sequence

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ATGATGGACTCACGAGAGGAGAGGGAGACCAAGAGGAGAGGGAAAGTCGAAGGAGACGGAGACTTCAGAGAAGAGAGGGAGAGTTTCTGTCTTTCTTATCTAACT
GTTGTCGGATCGAAGTGCGAGAGGAGAGGGATGGTGTCGGCGAGAGGAGAGGGAGGGCGTCGGCGAGGTCTAAGACTGAGAGTGAGGGAGGCAGTTGGTCATGAG
GGAGAGGAGAGCCATTCCCTATTGAAAGCCGAAGCCAAAGGCACACGCCACACGCCACACGCCACACGCCACGGACACTGTGCCCTCAACTCCAAATCCTACCCA
CCTATCATCTCCTCCATTCTTCGTCCTTCAATCTGCAGGCTCTTCTTCCATTCAAGATTGTGGATTACAGCAATGGTTTCCGACTCGGAGCTCATCGGCCGGCTC
CGAGAGTTTCTTCGGAATTCCGACCTCAATACCACCACCACTGCTATCGTCCGCCGGAAGCTCGAGGAGGACTTTGGCATTGATTTGTCCGATAAGAAGCGGTTT
ATTAGGGAACAGGTCGACTTGTTCCTCCAGACTGAGCACGAGAGAGTGGAAGAAGCTTGCGGCGACTGCGAGGAAGTCGACCAAGAGGCTGGAGATGAAAATTTG
AAGACCGAACCGGATGATGGAGATAGTGAAGATGGAGACAACGACGACGAAGATGATGAAAAGGGTAAAGCGGGTTCTGACAAGCTTAGTAAAGAGGGGAAGAGA
AGAGGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCCCCACAACTGCAGGAATTTATAGGAGCTCCTGAGATGGCAAGGACTGAGGTTGTTAGGCAACTATGG
AACCACATTAGAGAGAACAATTTGCAAGATCCCAGCAATAGAAGAAATATTCTCTGTGATGAATCGTTAAAAGCACTCTTTGGTGTCAATTCTATCAACATGTTT
CAAATGAATAAAGCTCTATCAAAGCATATTTGGCCATTGGAATCGAATGACGTTATTCCAGCCAAATCAAGTCAGAAAGAAAAGCAACAAAAGGAGAAGCAGCCA
AAGGAGAAGCCACAAAAGAAGCGGCAGAAGCAAGGAAAAGAAGAAGATTCAGATGACTCTGCAAGAGAGGAAAAGCGGCAAAAGAAAGGGAAATCTGGTTTTCTT
GCTCCTCTTCAACTTTCGGATGCTCTGATGACATTTCTTGGTACTGGAGAGGATGCATTGCCTCGCTCTGATGTAGTGAAAAGAATGTGGGATTACATAAAGCAA
AATAACCTTCAGTCAAAATGTGCTGCTAAGCACAAAGTGTTTATTTTAGATTATGCTCAAGAACAGAATGGTAAACTTCTTCGCTTGGAGGAGAGAGGAGGGGAA
AAGTCTGATAAAATCTCCCTGGGTTTTTCTGAGTTGTTGTGGCTCCATGATACTGTTATGGATTTGGCCTTAACCCCTATCACCCACAAATTCTTTCGCAGCCGT
TGA

mRNA sequence

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Protein sequence

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MMDSREERETKRRGKVEGDGDFREERESFCLSYLTVVGSKCERRGMVSARGEGGRRRGLRLRVREAVGHEGEESHSLLKAEAKGTRHTPHATRHGHCALNSKSYP
PIISSILRPSICRLFFHSRLWITAMVSDSELIGRLREFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHERVEEACGDCEEVDQEAGDENL
KTEPDDGDSEDGDNDDEDDEKGKAGSDKLSKEGKRRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVRQLWNHIRENNLQDPSNRRNILCDESLKALFGVNSINMF
QMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALMTFLGTGEDALPRSDVVKRMWDYIKQ
NNLQSKCAAKHKVFILDYAQEQNGKLLRLEERGGEKSDKISLGFSELLWLHDTVMDLALTPITHKFFRSR

Clc02G14120 (gene) of Watermelon (cordophanus) v2 genome