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Clc02G15170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G15170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionnuclear pore complex protein NUP43
Genome locationClcChr02:27735960..27736449
RNA-Seq ExpressionClc02G15170
SyntenyClc02G15170
Gene Ontology termsGO:0031080 - nuclear pore outer ring (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144716.1 nuclear pore complex protein NUP43 [Cucumis sativus]1.3e-1176.47Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLRSQQQPIILSGLEGSK SNPSPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
XP_008452472.1 PREDICTED: nuclear pore complex protein NUP43 [Cucumis melo]3.0e-1174.51Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLRSQQQPIILSGLEG+K SNPSPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
XP_022937892.1 nuclear pore complex protein NUP43 [Cucurbita moschata]1.6e-0972.55Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLR QQQPIILSGLEGSK SN SPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
XP_023538014.1 nuclear pore complex protein NUP43 [Cucurbita pepo subsp. pepo]1.6e-0972.55Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLR QQQPIILSGLEGSK SN SPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
XP_038889924.1 nuclear pore complex protein NUP43 [Benincasa hispida]1.3e-1176.47Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLRSQQQPIILSGLEGSK SNPSPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
TrEMBL top hitse value%identityAlignment
A0A0A0LJ46 Uncharacterized protein6.5e-1276.47Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLRSQQQPIILSGLEGSK SNPSPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
A0A1S3BTA6 nuclear pore complex protein NUP431.4e-1174.51Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLRSQQQPIILSGLEG+K SNPSPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
A0A5D3BAS9 Nuclear pore complex protein NUP431.4e-1174.51Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLRSQQQPIILSGLEG+K SNPSPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
A0A6J1FCG9 nuclear pore complex protein NUP438.0e-1072.55Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
        L  GSFGTVFAWDLR QQQPIILSGLEGSK SN SPCESE       W+ H
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNH
A0A6J1HYH3 nuclear pore complex protein NUP431.0e-0987.5Show/hide
Query:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESE
        L  GSFGTVFAWDLR QQQPIILSGLEGSK SN SPCESE
Subjt:  LGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESE
SwissProt top hitse value%identityAlignment
Q24JJ9 Nuclear pore complex protein NUP432.2e-0462.16Show/hide
Query:  GSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESE
        GS GTVFAWDLR  QQPI+LSG+  S+  N    ESE
Subjt:  GSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESE
Arabidopsis top hitse value%identityAlignment
AT4G30840.1 Transducin/WD40 repeat-like superfamily protein1.5e-0562.16Show/hide
Query:  GSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESE
        GS GTVFAWDLR  QQPI+LSG+  S+  N    ESE
Subjt:  GSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atgttaggcaggggctcttttggtactgtctttgcctgggatttgaggtcacaacagcagcctatcattctttcgggtctagaagggagcaaggcttcaaatccttcgcc
atgtgaaagtgaggcaagcagcctgtcgaactgctggcagaaccatgtgcaattaatggttttgacattgaccgtcaacacccatcagtaa
mRNA sequenceShow/hide mRNA sequence
atgttaggcaggggctcttttggtactgtctttgcctgggatttgaggtcacaacagcagcctatcattctttcgggtctagaagggagcaaggcttcaaatccttcgcc
atgtgaaagtgaggcaagcagcctgtcgaactgctggcagaaccatgtgcaattaatggttttgacattgaccgtcaacacccatcagtaa
Protein sequenceShow/hide protein sequence
MLGRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEASSLSNCWQNHVQLMVLTLTVNTHQ