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Clc02G16730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G16730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionmicrotubule-binding protein TANGLED
Genome locationClcChr02:29302663..29303339
RNA-Seq ExpressionClc02G16730
SyntenyClc02G16730
Gene Ontology termsGO:2000694 - regulation of phragmoplast microtubule organization (biological process)
GO:0008017 - microtubule binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599245.1 Microtubule-binding protein TANGLED, partial [Cucurbita argyrosperma subsp. sororia]3.2e-0476.19Show/hide
Query:  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV  AAAAATLNPVQVRETLKK+ + ++  Q
Subjt:  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNVQLQYFQ
KAG7030245.1 Microtubule-binding protein TANGLED [Cucurbita argyrosperma subsp. argyrosperma]5.5e-0472.73Show/hide
Query:  MVAKTPPKQKKMV----AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV    AAAAATLNPVQVRETLKK+ + ++  Q
Subjt:  MVAKTPPKQKKMV----AAAAATLNPVQVRETLKKLNVQLQYFQ
XP_011648821.1 microtubule-binding protein TANGLED [Cucumis sativus]5.5e-0474.42Show/hide
Query:  MVAKTPPKQKKMV---AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV   AAAAATLNPVQVRETLKK+ + +   Q
Subjt:  MVAKTPPKQKKMV---AAAAATLNPVQVRETLKKLNVQLQYFQ
XP_022946572.1 microtubule-binding protein TANGLED [Cucurbita moschata]3.2e-0476.19Show/hide
Query:  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV  AAAAATLNPVQVRETLKK+ + ++  Q
Subjt:  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNVQLQYFQ
XP_023547292.1 microtubule-binding protein TANGLED [Cucurbita pepo subsp. pepo]2.5e-0478.05Show/hide
Query:  MVAKTPPKQKKMV-AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV AAAAATLNPVQVRETLKK+ + ++  Q
Subjt:  MVAKTPPKQKKMV-AAAAATLNPVQVRETLKKLNVQLQYFQ
TrEMBL top hitse value%identityAlignment
A0A0A0LFS2 Microtubule binding protein2.6e-0474.42Show/hide
Query:  MVAKTPPKQKKMV---AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV   AAAAATLNPVQVRETLKK+ + +   Q
Subjt:  MVAKTPPKQKKMV---AAAAATLNPVQVRETLKKLNVQLQYFQ
A0A5D3D444 Microtubule-binding protein TANGLED4.5e-0471.11Show/hide
Query:  MVAKTPPKQKKMV-----AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV     AAAAATLNPVQVRETLKK+ + +   Q
Subjt:  MVAKTPPKQKKMV-----AAAAATLNPVQVRETLKKLNVQLQYFQ
A0A6J1G429 microtubule-binding protein TANGLED1.6e-0476.19Show/hide
Query:  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV  AAAAATLNPVQVRETLKK+ + ++  Q
Subjt:  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNVQLQYFQ
A0A6J1KAM7 microtubule-binding protein TANGLED3.5e-0477.5Show/hide
Query:  MVAKTPPKQKKMVAAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV AAAATLNPVQVRETLKK+ + ++  Q
Subjt:  MVAKTPPKQKKMVAAAAATLNPVQVRETLKKLNVQLQYFQ
A6YTD5 Microtubule binding protein4.5e-0471.11Show/hide
Query:  MVAKTPPKQKKMV-----AAAAATLNPVQVRETLKKLNVQLQYFQ
        MVAKTPPKQKKMV     AAAAATLNPVQVRETLKK+ + +   Q
Subjt:  MVAKTPPKQKKMV-----AAAAATLNPVQVRETLKKLNVQLQYFQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCTAAAACCCCACCAAAACAAAAGAAAATGGTAGCAGCAGCAGCAGCCACTCTCAACCCAGTTCAAGTTAGAGAAACACTAAAGAAGCTCAATGTTCAGCTTCA
ATATTTTCAGAATCCACGAACTTTTTTGGCTTCTTTTTCATACATAAATTGCAGGAAACAAAGAGCCCCCACTGAACTTCAGCTAGAACTTGACACAAATGGATGGAAAA
ATTCATCTTGTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCTAAAACCCCACCAAAACAAAAGAAAATGGTAGCAGCAGCAGCAGCCACTCTCAACCCAGTTCAAGTTAGAGAAACACTAAAGAAGCTCAATGTTCAGCTTCA
ATATTTTCAGAATCCACGAACTTTTTTGGCTTCTTTTTCATACATAAATTGCAGGAAACAAAGAGCCCCCACTGAACTTCAGCTAGAACTTGACACAAATGGATGGAAAA
ATTCATCTTGTTCTTAG
Protein sequenceShow/hide protein sequence
MVAKTPPKQKKMVAAAAATLNPVQVRETLKKLNVQLQYFQNPRTFLASFSYINCRKQRAPTELQLELDTNGWKNSSCS