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Clc02G17370 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G17370
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRubredoxin
Genome locationClcChr02:29923301..29923906
RNA-Seq ExpressionClc02G17370
SyntenyClc02G17370
Gene Ontology termsGO:0010207 - photosystem II assembly (biological process)
GO:0022900 - electron transport chain (biological process)
GO:0043448 - alkane catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
InterPro domainsIPR018527 - Rubredoxin, iron-binding site
IPR024934 - Rubredoxin-like domain
IPR024935 - Rubredoxin domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33910.1 rubredoxin [Cucumis melo subsp. melo]7.8e-9591.5Show/hide
Query:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL
        A YSSARPTLSFHLSQPSLPIPRF FKPP    AA +PPLQR SAARP SIFTLNSIDVSKEDKPTSDDPNTPS PPVVA E+ EEKFDKRRLEE+FAVL
Subjt:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL

Query:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ
        NTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYGSLLFFFALFLSGYFLQ
Subjt:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ

XP_004139218.2 uncharacterized protein LOC101219075 [Cucumis sativus]2.5e-9391.54Show/hide
Query:  ATYSSARP-TLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSP-PVVAAEEVEEKFDKRRLEEKFAV
        A YSSARP TLSFHLSQPSLPIPRF FKPP   A AA+PPL RSSAARP SIFTLNSIDVSKEDKPTSDDPNTP P PVVA EE EEKFDKRRLEEKFAV
Subjt:  ATYSSARP-TLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSP-PVVAAEEVEEKFDKRRLEEKFAV

Query:  LNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFL
        LNTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYGSL FFFALFLSGYFL
Subjt:  LNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFL

Query:  Q
        Q
Subjt:  Q

XP_016901839.1 PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo]7.8e-9591.5Show/hide
Query:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL
        A YSSARPTLSFHLSQPSLPIPRF FKPP    AA +PPLQR SAARP SIFTLNSIDVSKEDKPTSDDPNTPS PPVVA E+ EEKFDKRRLEE+FAVL
Subjt:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL

Query:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ
        NTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYGSLLFFFALFLSGYFLQ
Subjt:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ

XP_023545844.1 uncharacterized protein LOC111805157 [Cucurbita pepo subsp. pepo]4.3e-8583.25Show/hide
Query:  AATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSPPVV---AAEEVEEKFDKRRLEEKF
        AA Y+SARPTLSFHLSQPS+P PRF FKPP      A PPLQRS+AARP  IFTLNSIDVSKEDKPTS+DP+  +  VV   AAE  EEK D+RR+EEKF
Subjt:  AATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSPPVV---AAEEVEEKFDKRRLEEKF

Query:  AVLNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGY
        AVLNTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYG+L FFFALFLSGY
Subjt:  AVLNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGY

Query:  FLQ
        FLQ
Subjt:  FLQ

XP_038891199.1 rubredoxin [Benincasa hispida]4.9e-9790.69Show/hide
Query:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAA-----AVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSPPVVAAEEVEEKFDKRRLEEK
        A YSSARPTLSFHLSQPSLPIPRF FKPPA+++AA     AVPPLQRS+AARPNSIFTLNSIDVSKEDKPTSDDPNTPSPP V A + EEKFDKRRLEEK
Subjt:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAA-----AVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSPPVVAAEEVEEKFDKRRLEEK

Query:  FAVLNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSG
        FAVLNTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYGSL FFFALFLSG
Subjt:  FAVLNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSG

Query:  YFLQ
        YFLQ
Subjt:  YFLQ

TrEMBL top hitse value%identityAlignment
A0A0A0LJE4 Rubredoxin-like domain-containing protein1.2e-9391.54Show/hide
Query:  ATYSSARP-TLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSP-PVVAAEEVEEKFDKRRLEEKFAV
        A YSSARP TLSFHLSQPSLPIPRF FKPP   A AA+PPL RSSAARP SIFTLNSIDVSKEDKPTSDDPNTP P PVVA EE EEKFDKRRLEEKFAV
Subjt:  ATYSSARP-TLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSP-PVVAAEEVEEKFDKRRLEEKFAV

Query:  LNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFL
        LNTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYGSL FFFALFLSGYFL
Subjt:  LNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFL

Query:  Q
        Q
Subjt:  Q

A0A1S4E0U3 uncharacterized protein LOC1034995483.8e-9591.5Show/hide
Query:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL
        A YSSARPTLSFHLSQPSLPIPRF FKPP    AA +PPLQR SAARP SIFTLNSIDVSKEDKPTSDDPNTPS PPVVA E+ EEKFDKRRLEE+FAVL
Subjt:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL

Query:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ
        NTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYGSLLFFFALFLSGYFLQ
Subjt:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ

A0A5A7VDM5 Rubredoxin3.8e-9591.5Show/hide
Query:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL
        A YSSARPTLSFHLSQPSLPIPRF FKPP    AA +PPLQR SAARP SIFTLNSIDVSKEDKPTSDDPNTPS PPVVA E+ EEKFDKRRLEE+FAVL
Subjt:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL

Query:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ
        NTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYGSLLFFFALFLSGYFLQ
Subjt:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ

A0A6J1G4B1 uncharacterized protein LOC1114506242.1e-8583Show/hide
Query:  AATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSPPVVAAEEVEEKFDKRRLEEKFAVL
        AA Y+SARPTLSFHLSQPS+P PRF FKPP      A PPLQRS+AARP  IFTLNSIDVSKEDKPTSDDP+  +     A   EEK D+RR+EEKFAVL
Subjt:  AATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSPPVVAAEEVEEKFDKRRLEEKFAVL

Query:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ
        NTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYG+L FFFALFLSGYFLQ
Subjt:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ

E5GBR8 Rubredoxin3.8e-9591.5Show/hide
Query:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL
        A YSSARPTLSFHLSQPSLPIPRF FKPP    AA +PPLQR SAARP SIFTLNSIDVSKEDKPTSDDPNTPS PPVVA E+ EEKFDKRRLEE+FAVL
Subjt:  ATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPS-PPVVAAEEVEEKFDKRRLEEKFAVL

Query:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ
        NTGIYECRSCGHKFDEAVGDP YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN LTSGQKAVLIYGSLLFFFALFLSGYFLQ
Subjt:  NTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ

SwissProt top hitse value%identityAlignment
P00270 Rubredoxin1.2e-1054Show/hide
Query:  IYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESK
        IY C  CG+++D A GDP   I PG  FE LP+DW CP CGA+K  FE +
Subjt:  IYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESK

P73068 Rubredoxin1.2e-1842.73Show/hide
Query:  KRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIA--GFAQNQQYGLGGNALTSGQKAVLIYGSLL
        +R  E+  A L +  +ECR+CG+ +  + GD    ++PG PFE LP +W+CP CGA +++F S     A  GFA+N  YG G N ++ G+K +LI+GSL 
Subjt:  KRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIA--GFAQNQQYGLGGNALTSGQKAVLIYGSLL

Query:  FFFALFLSGY
          F  FLS Y
Subjt:  FFFALFLSGY

Q9FDN6 High molecular weight rubredoxin2.1e-1055.32Show/hide
Query:  YECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFE
        Y+C  C + +D   GDP + IAPG PF  LPEDW CP CGA K  FE
Subjt:  YECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFE

Q9WWN1 Rubredoxin2.3e-1745.79Show/hide
Query:  AVLNTGI--YECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--KSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALF
        AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   +   +GF +N  YGLG N LT  QK +LI+G+L   F  F
Subjt:  AVLNTGI--YECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--KSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALF

Query:  LSGYFLQ
        +S Y LQ
Subjt:  LSGYFLQ

Q9XBL8 Rubredoxin1.4e-1745.79Show/hide
Query:  AVLNTGI--YECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--KSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALF
        AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   +   +GF +N  YGLG N LT  QK +LI+G+L   F  F
Subjt:  AVLNTGI--YECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--KSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALF

Query:  LSGYFLQ
        +S Y LQ
Subjt:  LSGYFLQ

Arabidopsis top hitse value%identityAlignment
AT1G54500.1 Rubredoxin-like superfamily protein3.5e-5371.33Show/hide
Query:  VSKED--KPTSDDPNTPSPPVVAAEEVEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEI
        VS++D   P S    T        +EVE+  +KRR+EEKFAVLNTGIYECRSCG+K+DE+ GDP+YPI PG  F++LPEDWRCPTCGAA+SFFESK VEI
Subjt:  VSKED--KPTSDDPNTPSPPVVAAEEVEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEI

Query:  AGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ
        AGFAQNQQYGLGGNALTSGQK  LI+GSLL FFALFLSGYF+Q
Subjt:  AGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTACTTATTCCTCTGCAAGACCCACTCTCTCTTTCCATCTCTCCCAACCTTCCCTTCCAATTCCCAGATTCACCTTCAAACCCCCCGCCGCTTCTGCCGCCGC
CGCCGTCCCGCCGTTGCAGAGATCGTCGGCAGCGAGACCGAACTCCATTTTCACCCTCAACTCTATTGACGTCTCTAAGGAAGACAAACCCACTTCTGACGACCCAAATA
CGCCATCGCCGCCGGTTGTGGCGGCGGAAGAGGTGGAGGAGAAGTTTGATAAGCGGCGGCTAGAAGAGAAATTTGCAGTGCTGAACACAGGGATATATGAGTGCAGGTCA
TGTGGACATAAGTTCGATGAGGCGGTCGGGGATCCGGCGTATCCGATAGCGCCGGGACTGCCATTCGAGCAGCTGCCGGAGGATTGGCGGTGCCCGACGTGTGGGGCGGC
GAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCTGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGGAACGCTTTGACTTCTGGGCAGAAGGCTGTGCTTATAT
ATGGAAGCTTGTTGTTCTTCTTTGCTCTCTTCCTTTCTGGTTATTTCTTGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCTACTTATTCCTCTGCAAGACCCACTCTCTCTTTCCATCTCTCCCAACCTTCCCTTCCAATTCCCAGATTCACCTTCAAACCCCCCGCCGCTTCTGCCGCCGC
CGCCGTCCCGCCGTTGCAGAGATCGTCGGCAGCGAGACCGAACTCCATTTTCACCCTCAACTCTATTGACGTCTCTAAGGAAGACAAACCCACTTCTGACGACCCAAATA
CGCCATCGCCGCCGGTTGTGGCGGCGGAAGAGGTGGAGGAGAAGTTTGATAAGCGGCGGCTAGAAGAGAAATTTGCAGTGCTGAACACAGGGATATATGAGTGCAGGTCA
TGTGGACATAAGTTCGATGAGGCGGTCGGGGATCCGGCGTATCCGATAGCGCCGGGACTGCCATTCGAGCAGCTGCCGGAGGATTGGCGGTGCCCGACGTGTGGGGCGGC
GAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCTGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGGAACGCTTTGACTTCTGGGCAGAAGGCTGTGCTTATAT
ATGGAAGCTTGTTGTTCTTCTTTGCTCTCTTCCTTTCTGGTTATTTCTTGCAATAA
Protein sequenceShow/hide protein sequence
MAATYSSARPTLSFHLSQPSLPIPRFTFKPPAASAAAAVPPLQRSSAARPNSIFTLNSIDVSKEDKPTSDDPNTPSPPVVAAEEVEEKFDKRRLEEKFAVLNTGIYECRS
CGHKFDEAVGDPAYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKAVLIYGSLLFFFALFLSGYFLQ