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Clc02G17390 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G17390
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S24
Genome locationClcChr02:29929266..29931821
RNA-Seq ExpressionClc02G17390
SyntenyClc02G17390
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7833558.1 40S ribosomal protein S24-1-like [Senna tora]6.5e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLAR+YDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

XP_008455742.1 PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]2.2e-65100Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

XP_022143165.1 40S ribosomal protein S24-1 [Momordica charantia]6.5e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL+RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

XP_022937688.1 40S ribosomal protein S24-1-like [Cucurbita moschata]8.5e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

XP_022946610.1 40S ribosomal protein S24-1 [Cucurbita moschata]6.5e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

TrEMBL top hitse value%identityAlignment
A0A1S3C1J8 40S ribosomal protein S241.1e-65100Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A5D3D4C1 40S ribosomal protein S241.1e-65100Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A6J1CN14 40S ribosomal protein S243.2e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL+RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A6J1G4D5 40S ribosomal protein S243.2e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

E5GBS0 40S ribosomal protein S241.1e-65100Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

SwissProt top hitse value%identityAlignment
Q56JU9 40S ribosomal protein S242.7e-3765.15Show/hide
Query:  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ +IDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Q5RAQ8 40S ribosomal protein S242.7e-3765.15Show/hide
Query:  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ +IDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Q8LC83 40S ribosomal protein S24-21.2e-5887.12Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q962Q6 40S ribosomal protein S244.9e-3963.64Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        M +   TIRTRKFMTNRLL+RKQ + DVLHPG+P VSK E++EKLA++Y V  P+ +FVF F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K   +RKQ KERKNR KK+RG KK+K   AAK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q9SS17 40S ribosomal protein S24-12.3e-6090.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein1.6e-6190.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

AT5G28060.1 Ribosomal protein S24e family protein8.8e-6087.12Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGATGGGATGAAAAGTCACAATATAATGATTTTCGAGCTCCTGAGGCATATATTCCATCAAATTCATCATTTCAACAACTTGTTGAATATATCCAATGGT
TTTGCCGCTCTTATCAATCCCAAATCAGGACTCTCCTCTTCGCCGTCGCCTTCTTCGAGCTCCAAGGCTTCCATCCTCTTCAGAGCGGCTTCAGCCATGGCGGAC
AAGGCAGTCACCATCCGAACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCATCATTGATGTTCTTCACCCAGGTAGACCCAATGTTTCAAAG
GCTGAGCTGAAGGAGAAATTGGCCAGAATCTATGATGTGAAAGACCCAAATGCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCCACTGGG
TTTGGTTTGATCTACGATTCTGTTGAGAATGCAAAGAAGTATGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAA
ATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGTGGTGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGATGGGATGAAAAGTCACAATATAATGATTTTCGAGCTCCTGAGGCATATATTCCATCAAATTCATCATTTCAACAACTTGTTGAATATATCCAATGGT
TTTGCCGCTCTTATCAATCCCAAATCAGGACTCTCCTCTTCGCCGTCGCCTTCTTCGAGCTCCAAGGCTTCCATCCTCTTCAGAGCGGCTTCAGCCATGGCGGAC
AAGGCAGTCACCATCCGAACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCATCATTGATGTTCTTCACCCAGGTAGACCCAATGTTTCAAAG
GCTGAGCTGAAGGAGAAATTGGCCAGAATCTATGATGTGAAAGACCCAAATGCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCCACTGGG
TTTGGTTTGATCTACGATTCTGTTGAGAATGCAAAGAAGTATGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAA
ATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGTGGTGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATAA
Protein sequenceShow/hide protein sequence
MVDGMKSHNIMIFELLRHIFHQIHHFNNLLNISNGFAALINPKSGLSSSPSPSSSSKASILFRAASAMADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSK
AELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK