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Clc02G17670 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G17670
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionpathogenesis-related protein PR-4-like
Genome locationClcChr02:30246264..30247107
RNA-Seq ExpressionClc02G17670
SyntenyClc02G17670
Gene Ontology termsGO:0042742 - defense response to bacterium (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0004540 - ribonuclease activity (molecular function)
InterPro domainsIPR001153 - Barwin domain
IPR018226 - Barwin, conserved site
IPR036908 - RlpA-like domain superfamily
IPR044301 - Pathogenesis-related protein-4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139239.1 pathogenesis-related protein PR-4 [Cucumis sativus]7.2e-7190.85Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        M +GSIMMILVLALG+LSLANAQSATNVRATYHLYNPQ+INWDYL+ASVFCATWDA+KPLEWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNTET ASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQC+NGGLDLDVNVFRRIDTNGNGN +GHLIVNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

XP_008456018.1 PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo]3.8e-7292.25Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        ME+GSIMMILVLALG+LSLANAQSATNVRATYHLYNPQ+INWDYL+ASVFCATWDANKPLEWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTET ASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQC+NGGLDLDVNVFRRIDTNGNGN +GHL VNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

XP_022999102.1 pathogenesis-related protein PR-4-like [Cucurbita maxima]4.7e-7089.44Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        ME+GS +MIL LALGILSLANAQSA NVRATYHLYNPQ+INWDYL+ASVFCATWDANKP+EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTET ASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQC+NGGLDLDVNVF+RIDTNGNG  +GHLIVNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

XP_023521169.1 pathogenesis-related protein P2-like [Cucurbita pepo subsp. pepo]9.4e-7190.85Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        M++G  +M+L LALGILSLANAQSATNVRATYHLYNPQ+INWDYL+ASVFCATWDANKPLE+RRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQCSNGGLDLDVNVFRRIDTNGNG  +GHLIVNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

XP_038890575.1 pathogenesis-related protein PR-4-like [Benincasa hispida]2.5e-7190.14Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        ME+GSIMMILVLALG+LS+ANAQSA NVRATYHLYNPQNINWDYL+ASV+CATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTET AS IV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQCSNGGLDLDVNVF+++DTNGNGN +GHL VNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

TrEMBL top hitse value%identityAlignment
A0A0A0LIC8 Barwin domain-containing protein3.5e-7190.85Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        M +GSIMMILVLALG+LSLANAQSATNVRATYHLYNPQ+INWDYL+ASVFCATWDA+KPLEWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNTET ASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQC+NGGLDLDVNVFRRIDTNGNGN +GHLIVNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

A0A1S3C3H6 pathogenesis-related protein PR-4-like1.9e-7292.25Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        ME+GSIMMILVLALG+LSLANAQSATNVRATYHLYNPQ+INWDYL+ASVFCATWDANKPLEWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTET ASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQC+NGGLDLDVNVFRRIDTNGNGN +GHL VNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

A0A5D3D4G8 Pathogenesis-related protein PR-4-like1.9e-7292.25Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        ME+GSIMMILVLALG+LSLANAQSATNVRATYHLYNPQ+INWDYL+ASVFCATWDANKPLEWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTET ASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQC+NGGLDLDVNVFRRIDTNGNGN +GHL VNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

A0A6J1G2U1 pathogenesis-related protein PR-4-like1.1e-6988.73Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        ME+ SI+MIL LALG+LSLANAQSA NVRATYHLYNPQ+INWDYL+ASVFCATWDANKP+EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTET ASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQC+NGGLDLDVNVF+RIDTNGNG  +GHLIVNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

A0A6J1K9X1 pathogenesis-related protein PR-4-like2.3e-7089.44Show/hide
Query:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV
        ME+GS +MIL LALGILSLANAQSA NVRATYHLYNPQ+INWDYL+ASVFCATWDANKP+EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTET ASEIV
Subjt:  MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIV

Query:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        RIVDQC+NGGLDLDVNVF+RIDTNGNG  +GHLIVNYQFVNC
Subjt:  RIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

SwissProt top hitse value%identityAlignment
P09761 Wound-induced protein WIN11.3e-5477.31Show/hide
Query:  SATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDT
        SA NVRATYH+YNPQN+ WD    S +C+TWDANKPL WR++YGWTAFCGPVGPRG+ SCG+CLRVTNT T A   VRIVDQCSNGGLDLDVNVFR+IDT
Subjt:  SATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDT

Query:  NGNGNSKGHLIVNYQFVNC
        +GNGN +GHLIVNYQFV+C
Subjt:  NGNGNSKGHLIVNYQFVNC

P09762 Wound-induced protein WIN21.2e-5274.79Show/hide
Query:  SATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDT
        SA NVRATYH+YNPQN+ WD    S +C+TWDANKP  WR +YGWTAFCGPVGPRG+ SCG+CLRVTNT T A   VRIVDQCSNGGLDLD+NVF++IDT
Subjt:  SATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDT

Query:  NGNGNSKGHLIVNYQFVNC
        +G GN +GHLIVNYQFVNC
Subjt:  NGNGNSKGHLIVNYQFVNC

P29062 Pathogenesis-related protein PR-4A2.6e-5570.8Show/hide
Query:  IMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQ
        + + L++   ++++A AQSATNVR+TYHLYNPQNINWD   AS FCATWDA+KPL WR++YGWTAFCGP GPRGQ SCGRCLRVTNT T     VRIVDQ
Subjt:  IMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQ

Query:  CSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        CSNGGLDLDVNVF ++DTNG G  +GHL VNY+FVNC
Subjt:  CSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

P29063 Pathogenesis-related protein PR-4B1.2e-5571.53Show/hide
Query:  IMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQ
        + + L++   ++++A AQSATNVR+TYHLYNPQNINWD   AS FCATWDA+KPL WR++YGWTAFCGP GPRGQ SCGRCLRVTNT T     VRIVDQ
Subjt:  IMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQ

Query:  CSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        CSNGGLDLDVNVF ++DTNG G  +GHLIVNY+FVNC
Subjt:  CSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

P32045 Pathogenesis-related protein P21.1e-5672.03Show/hide
Query:  MERGSIMMILVLALG-ILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEI
        MER + + +    +  ++++A AQSATNVRATYHLYNPQNINWD   ASV+CATWDA+KPLEWRRRYGWTAFCGP GP GQASCGRCLRVTNT T   E 
Subjt:  MERGSIMMILVLALG-ILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEI

Query:  VRIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC
        VRIVDQC NGGLDLDVNVF R+DTNG G  +G+L VNY+FVNC
Subjt:  VRIVDQCSNGGLDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC

Arabidopsis top hitse value%identityAlignment
AT3G04720.1 pathogenesis-related 44.9e-4969.17Show/hide
Query:  QSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRID
        +SA+NVRATYH YNP   NWD    S +C+TWDA+KP  WR +YGWTAFCGP GPRGQASCG+CLRV NT T A+  VRIVDQCSNGGLDLDV +F +ID
Subjt:  QSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRID

Query:  TNGNGNSKGHLIVNYQFVNC
        T+G G  +GHLIV+YQFV+C
Subjt:  TNGNGNSKGHLIVNYQFVNC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atggagagaggaagtattatgatgattttggtgttggctttggggattttgagtttggcaaatgctcaaagtgcaacaaatgtgagagctacttatcatttgtacaaccc
acaaaatatcaattgggactatcttaaagcaagtgttttttgtgcaacatgggatgctaacaaacctttagagtggcgccgtcggtatggctggactgccttctgcggtc
ctgtcggccctcgtggccaagcttcttgtggacggtgtttgagggtgacgaacactgaaacaaaagcttcagaaatagtgagaattgttgatcaatgctccaatggaggg
ttggatttggatgtgaatgtctttaggaggattgacactaatggaaatggaaactccaaaggtcatcttattgttaactatcagtttgtcaattgttga
mRNA sequenceShow/hide mRNA sequence
cgcactcatattcttctataaattaaagcactctcccaaccaaaccttacatccaaagaaaaaaactacaaacatttataagagacagagtattagagagaatttaagaa
agcaaagaatggagagaggaagtattatgatgattttggtgttggctttggggattttgagtttggcaaatgctcaaagtgcaacaaatgtgagagctacttatcatttg
tacaacccacaaaatatcaattgggactatcttaaagcaagtgttttttgtgcaacatgggatgctaacaaacctttagagtggcgccgtcggtatggctggactgcctt
ctgcggtcctgtcggccctcgtggccaagcttcttgtggacggtgtttgagggtgacgaacactgaaacaaaagcttcagaaatagtgagaattgttgatcaatgctcca
atggagggttggatttggatgtgaatgtctttaggaggattgacactaatggaaatggaaactccaaaggtcatcttattgttaactatcagtttgtcaattgttgagat
ttctactctaatttcatttcattcttctagaagaagaaagaaaatcatgttctaaggaataaagtttgaataataaaatatgaaataaaggttccttt
Protein sequenceShow/hide protein sequence
MERGSIMMILVLALGILSLANAQSATNVRATYHLYNPQNINWDYLKASVFCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVRIVDQCSNGG
LDLDVNVFRRIDTNGNGNSKGHLIVNYQFVNC