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Clc02G17700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G17700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPSII 6.1 kDa protein
Genome locationClcChr02:30265758..30266905
RNA-Seq ExpressionClc02G17700
SyntenyClc02G17700
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139238.1 photosystem II reaction center W protein, chloroplastic [Cucumis sativus]8.2e-4978Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKK-SEESMVSGTVATVVMAALAAAGPAVALVDE
        MAS+LL HS LLLKGSSK+L SPTMAAH+                LP LQKMKKGG+KC VEEK EGKK SEESMV GTV  V MAALAAAGPAVALVDE
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKK-SEESMVSGTVATVVMAALAAAGPAVALVDE

Query:  RLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        RLSTEGTGLPFGLSNNLLGWILA VF LIWALYFVYASSLDEDEDSGLSL
Subjt:  RLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]2.1e-4977.18Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER
        MAS+LL HS LLLKGSSK+LPS TMAA +                LP LQKMK G +KC+VEEK EGKKSEESMV GTVA V MAALAAAGPAVALVDER
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER

Query:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        +STEGTGLPFGLSNNLLGWILAG+FGLIWALYFVYASSLDEDEDSGLSL
Subjt:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

XP_016902308.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo]9.6e-5076.13Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKEN--WKRSVFFFS----GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAV
        MAS+LL HS LLLKGSSK+LPS TMAA  F    +    R +   +    GLP LQKMK G +KC+VEEK EGKKSEESMV GTVA V MAALAAAGPAV
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKEN--WKRSVFFFS----GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAV

Query:  ALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        ALVDER+STEGTGLPFGLSNNLLGWILAG+FGLIWALYFVYASSLDEDEDSGLSL
Subjt:  ALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

XP_023521133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]1.7e-4670.47Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER
        MAS+LLSHS + LKGS K+LP P MAAH+                L ++QKMKKGG+KCR+EEK EGK+S+ESM+SGTVA V    +A AGPAVALVDER
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER

Query:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        LSTEGTGLPFGLSNNLLGWILAG+FG IWALYFVYASSL+EDEDSGLSL
Subjt:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.1e-5381.21Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER
        MAS+LLSHS LLLKGSSKVLPSP +AAH+                LPMLQKMKKGG+KCRVEEK EGKKSEES+VSGT+A V MAALAAAGPAVALVDER
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER

Query:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        LSTEGTGLPFGLSNNLLGWILAGVF LIWALYFVYASSLDEDEDSGLSL
Subjt:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein4.0e-4978Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKK-SEESMVSGTVATVVMAALAAAGPAVALVDE
        MAS+LL HS LLLKGSSK+L SPTMAAH+                LP LQKMKKGG+KC VEEK EGKK SEESMV GTV  V MAALAAAGPAVALVDE
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKK-SEESMVSGTVATVVMAALAAAGPAVALVDE

Query:  RLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        RLSTEGTGLPFGLSNNLLGWILA VF LIWALYFVYASSLDEDEDSGLSL
Subjt:  RLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein1.0e-4977.18Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER
        MAS+LL HS LLLKGSSK+LPS TMAA +                LP LQKMK G +KC+VEEK EGKKSEESMV GTVA V MAALAAAGPAVALVDER
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER

Query:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        +STEGTGLPFGLSNNLLGWILAG+FGLIWALYFVYASSLDEDEDSGLSL
Subjt:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

A0A1S4E257 PSII 6.1 kDa protein4.7e-5076.13Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKEN--WKRSVFFFS----GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAV
        MAS+LL HS LLLKGSSK+LPS TMAA  F    +    R +   +    GLP LQKMK G +KC+VEEK EGKKSEESMV GTVA V MAALAAAGPAV
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKEN--WKRSVFFFS----GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAV

Query:  ALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        ALVDER+STEGTGLPFGLSNNLLGWILAG+FGLIWALYFVYASSLDEDEDSGLSL
Subjt:  ALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein1.1e-4669.13Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER
        MAS+LLSHS + LKGS K+LP P MAAH+                LP++QKMKKGG+KC++EEK EGK+S+ES++SGTVA +    +A AGPAVALVDER
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER

Query:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        LSTEGTGLPFGLSNNLLGWILAG+FG IWALYFVYASSL+EDEDSGLSL
Subjt:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

A0A6J1G2Y6 PSII 6.1 kDa protein2.0e-4572.48Show/hide
Query:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER
        MASSLLS S +LLKGSS VLP P MAA K                   L KMKKG +KC+VEEK EGK+SEE MVSGTVATV MA +AAAGPAVALVDER
Subjt:  MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDER

Query:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL
        LSTEGTGLPFGLSNNLLGWIL G+FGLIW+LYFVYASSLDE +DSGLSL
Subjt:  LSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic3.5e-2662.62Show/hide
Query:  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDED
        GLP + K KKGGV+C +E     K+   S++   V+    AAL A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIW  +FVY SSL+ED
Subjt:  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDED

Query:  EDSGLSL
        E+SGLSL
Subjt:  EDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic1.0e-2561.68Show/hide
Query:  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDED
        GLP + K  K  V C +E K    ++  +      A+++ AA AA  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWALYFVYAS L+ED
Subjt:  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDED

Query:  EDSGLSL
        E+SGLSL
Subjt:  EDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic5.7e-2153.92Show/hide
Query:  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDED
        GLP ++  +   V+C   ++A    +  + V G  A+ ++A  A A PA+ALVDER+STEGTGL  GLSNNLLGWIL GVFGLIW+LY +Y S L+EDE+
Subjt:  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDED

Query:  SG
        SG
Subjt:  SG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic3.2e-1145.45Show/hide
Query:  KAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLD--EDEDSGLSL
        KA   +SE +     ++T  + A  AA PA ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA++F+    L   ED D GL L
Subjt:  KAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLD--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W2.5e-2762.62Show/hide
Query:  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDED
        GLP + K KKGGV+C +E     K+   S++   V+    AAL A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIW  +FVY SSL+ED
Subjt:  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDED

Query:  EDSGLSL
        E+SGLSL
Subjt:  EDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCTCTGCTTTCTCACTCCAGCCTTTTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAACAATGGCAGCTCACAAGTTTCATGGGAAAGAAAATTGGAA
GAGGAGTGTTTTTTTCTTTTCAGGGTTGCCTATGTTGCAAAAGATGAAGAAGGGAGGGGTAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCA
TGGTTTCGGGGACGGTGGCAACGGTGGTGATGGCTGCATTGGCAGCAGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGCACAGGGCTGCCTTTT
GGCTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTT
GTCACTTTGA
mRNA sequenceShow/hide mRNA sequence
TGCATAAAAATGAAAACTTTCCGCTGTCCACTCTTCAAAACACAAAAAAATAGAAGAAAATTCTTCAGATCCAAGTGTTAAAGCCAATCAAAGCCTTTCTCCTCACCCTC
AAGCAGCTGTTTTTGGCTGGAAAAAATGGCTTCCTCTCTGCTTTCTCACTCCAGCCTTTTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAACAATGGCAGCTCACA
AGTTTCATGGGAAAGAAAATTGGAAGAGGAGTGTTTTTTTCTTTTCAGGGTTGCCTATGTTGCAAAAGATGAAGAAGGGAGGGGTAAAGTGTAGGGTGGAAGAGAAGGCA
GAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCGGGGACGGTGGCAACGGTGGTGATGGCTGCATTGGCAGCAGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAG
CACAGAAGGCACAGGGCTGCCTTTTGGCTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCT
TGGATGAGGATGAAGATTCTGGTTTGTCACTTTGA
Protein sequenceShow/hide protein sequence
MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPF
GLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL