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Clc02G17880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G17880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVQ domain-containing protein
Genome locationClcChr02:30446105..30451557
RNA-Seq ExpressionClc02G17880
SyntenyClc02G17880
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063578.1 hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]7.2e-1674.32Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSDAL-AHRRNHKSPSVGTPTPSSTFYADHEMEVLKFSDG-MASLLQFDDQEC
        MMIKAS+ALEFRAIVQQLTGFDS++    RRN KS S    TPSS F+AD EMEVLKFSD  MASLLQFDDQ C
Subjt:  MMIKASNALEFRAIVQQLTGFDSDAL-AHRRNHKSPSVGTPTPSSTFYADHEMEVLKFSDG-MASLLQFDDQEC

KAF3969566.1 hypothetical protein CMV_006646 [Castanea mollissima]1.6e-0761.4Show/hide
Query:  ENRYNNQ-NQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALA
        +N Y NQ  +S + TKV+RKP+KVKYISSP+M+KA N  EFRAIVQQLTG ++D ++
Subjt:  ENRYNNQ-NQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALA

KAG6599333.1 hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3070.09Show/hide
Query:  MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSVGTPTPS-STFYADHEMEVLKFSDGMASLL
        MGKCGEN + +Q QSQNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTGF S +   R NHK P     TPS ST +A+ +ME LK SD M+SLL
Subjt:  MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSVGTPTPS-STFYADHEMEVLKFSDGMASLL

Query:  QFDDQEC
        +FDD+ C
Subjt:  QFDDQEC

KGN60779.1 hypothetical protein Csa_019238 [Cucumis sativus]1.4e-3072.17Show/hide
Query:  MGKCGENRYNN------QNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSVGTPTPSSTFYAD-HEMEVLKFSD
        MGKCGEN+Y N      Q+Q+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDS+    RRN K  S    TPS+ F+AD HEMEVLKFSD
Subjt:  MGKCGENRYNN------QNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSVGTPTPSSTFYAD-HEMEVLKFSD

Query:  G--MASLLQFDDQEC
           M SLLQFD Q C
Subjt:  G--MASLLQFDDQEC

XP_021282108.1 uncharacterized protein LOC110414990 [Herrania umbratica]2.5e-0863.79Show/hide
Query:  MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD
        MGK  ++R    ++S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +SD
Subjt:  MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD

TrEMBL top hitse value%identityAlignment
A0A0A0LIA7 VQ domain-containing protein6.6e-3172.17Show/hide
Query:  MGKCGENRYNN------QNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSVGTPTPSSTFYAD-HEMEVLKFSD
        MGKCGEN+Y N      Q+Q+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDS+    RRN K  S    TPS+ F+AD HEMEVLKFSD
Subjt:  MGKCGENRYNN------QNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSVGTPTPSSTFYAD-HEMEVLKFSD

Query:  G--MASLLQFDDQEC
           M SLLQFD Q C
Subjt:  G--MASLLQFDDQEC

A0A2P5BBD6 VQ motif containing protein3.9e-0766.67Show/hide
Query:  NQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD
        N  + Q P K ++KPIK+KYISSPMM++A NA EFRAIVQQLTG +SD
Subjt:  NQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD

A0A5A7V7M1 VQ domain-containing protein3.5e-1674.32Show/hide
Query:  MMIKASNALEFRAIVQQLTGFDSDAL-AHRRNHKSPSVGTPTPSSTFYADHEMEVLKFSDG-MASLLQFDDQEC
        MMIKAS+ALEFRAIVQQLTGFDS++    RRN KS S    TPSS F+AD EMEVLKFSD  MASLLQFDDQ C
Subjt:  MMIKASNALEFRAIVQQLTGFDSDAL-AHRRNHKSPSVGTPTPSSTFYADHEMEVLKFSDG-MASLLQFDDQEC

A0A6A1UKY6 VQ domain-containing protein8.6e-0756.6Show/hide
Query:  NRY-NNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD
        N Y ++++Q+QNPTK +++P+K+KYISSP  ++ASN +EFRAIVQ+LTG +S+
Subjt:  NRY-NNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD

A0A6J1A533 uncharacterized protein LOC1104149901.2e-0863.79Show/hide
Query:  MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD
        MGK  ++R    ++S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +SD
Subjt:  MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGTGCGGAGAGAATCGATACAACAACCAAAACCAAAGCCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGAT
CAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGATGCCCTGGCTCACCGGAGAAACCACAAATCGCCTTCCGTTGGCACCC
CAACTCCATCTTCAACGTTTTATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCAGATGGCATGGCGTCGCTCCTCCAATTTGATGATCAAGAGTGTCGCTGTCGCGTT
GAAGGGTATCGTTCTCTCGCTGCGTATCGCTTCCCCCGGATTCACATTGTCCCGCTCTCCCTCGGCCAGGCATTCACGCTATCGGGCTCTCGTGGTATCGCTATCTCACT
CTCCCGCTGTCTTATGCTCTCGCTCTCTCGCTCTCCCGCTCGACTCACGCTTTCCCGGCGCCCAGTGTCGCCGCAGCCTCGTGGTATCACTCTCTCGCCGGTTTCGCTGT
CTCGGCTCTCGCTCAAGTCTCGCTTCTCGCTCGAGAGTCATTTTCTCTCGGATTTTTGGCTCTCACCAGCGGTTCCCTTCTTGTCCGGCCAGAACAGTACCTTAATCCGT
AGGATCGGGGGAAGCTACGAGTTGGATCGCGTTCGGGAATTGTTACAAGAGGAGCAATGTAGTAATTTATGGATCGATCACCAGGAGGTTGTGTACCTTCGGGTCCACAG
GAGGTTGTGTTCCTTCAGGATCACTAAAGGATGTGTACCTTCGGGTTCACTAGAGGTTGTGTTCCTTCGGGTTCACAGGAGGTTGTGTTCCTTCGGGTTCACCAGAGGTT
GTGCTCTTTCGAGTACATTAGAGGTTTGTGTTCCTTCGGGATCACCAGAGGTAAGAGTTTCCTTCGGGGCTCTAGAGGTAAGGGAAAGAACATGGTGGCGAATGACAAGA
AGAATCCTTGAGGGCATCACGGGACCCGTAGTAGCTTCCGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGTGCGGAGAGAATCGATACAACAACCAAAACCAAAGCCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGAT
CAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGATGCCCTGGCTCACCGGAGAAACCACAAATCGCCTTCCGTTGGCACCC
CAACTCCATCTTCAACGTTTTATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCAGATGGCATGGCGTCGCTCCTCCAATTTGATGATCAAGAGTGTCGCTGTCGCGTT
GAAGGGTATCGTTCTCTCGCTGCGTATCGCTTCCCCCGGATTCACATTGTCCCGCTCTCCCTCGGCCAGGCATTCACGCTATCGGGCTCTCGTGGTATCGCTATCTCACT
CTCCCGCTGTCTTATGCTCTCGCTCTCTCGCTCTCCCGCTCGACTCACGCTTTCCCGGCGCCCAGTGTCGCCGCAGCCTCGTGGTATCACTCTCTCGCCGGTTTCGCTGT
CTCGGCTCTCGCTCAAGTCTCGCTTCTCGCTCGAGAGTCATTTTCTCTCGGATTTTTGGCTCTCACCAGCGGTTCCCTTCTTGTCCGGCCAGAACAGTACCTTAATCCGT
AGGATCGGGGGAAGCTACGAGTTGGATCGCGTTCGGGAATTGTTACAAGAGGAGCAATGTAGTAATTTATGGATCGATCACCAGGAGGTTGTGTACCTTCGGGTCCACAG
GAGGTTGTGTTCCTTCAGGATCACTAAAGGATGTGTACCTTCGGGTTCACTAGAGGTTGTGTTCCTTCGGGTTCACAGGAGGTTGTGTTCCTTCGGGTTCACCAGAGGTT
GTGCTCTTTCGAGTACATTAGAGGTTTGTGTTCCTTCGGGATCACCAGAGGTAAGAGTTTCCTTCGGGGCTCTAGAGGTAAGGGAAAGAACATGGTGGCGAATGACAAGA
AGAATCCTTGAGGGCATCACGGGACCCGTAGTAGCTTCCGCTTAG
Protein sequenceShow/hide protein sequence
MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSVGTPTPSSTFYADHEMEVLKFSDGMASLLQFDDQECRCRV
EGYRSLAAYRFPRIHIVPLSLGQAFTLSGSRGIAISLSRCLMLSLSRSPARLTLSRRPVSPQPRGITLSPVSLSRLSLKSRFSLESHFLSDFWLSPAVPFLSGQNSTLIR
RIGGSYELDRVRELLQEEQCSNLWIDHQEVVYLRVHRRLCSFRITKGCVPSGSLEVVFLRVHRRLCSFGFTRGCALSSTLEVCVPSGSPEVRVSFGALEVRERTWWRMTR
RILEGITGPVVASA