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Clc02G18410 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G18410
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCell wall protein
Genome locationClcChr02:30948331..30949953
RNA-Seq ExpressionClc02G18410
SyntenyClc02G18410
Gene Ontology termsNA
InterPro domainsIPR034565 - Putative cell wall protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065341.1 putative cell wall protein [Cucumis melo var. makuwa]1.2e-3067.57Show/hide
Query:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN
        MA+R  PSL  IFLVIL +TGEAVAAR+F            P+        SVL+PGIGRITLSPYDKGSHGGGH+  YGSNPAP+R+YIPGGDDNFIPN
Subjt:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN

Query:  PGFEVPIPANI
        PG+EVPIPANI
Subjt:  PGFEVPIPANI

PQQ05090.1 hypothetical protein Pyn_37066 [Prunus yedoensis var. nudiflora]2.8e-1644.64Show/hide
Query:  LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPY----------DKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFI
        L+ + +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PGIGR+   P           D GS G       G  P+    Y+PGGDD F+
Subjt:  LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPY----------DKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFI

Query:  PNPGFEVPIPAN
        PNPG+EVP P N
Subjt:  PNPGFEVPIPAN

XP_022140620.1 putative cell wall protein [Momordica charantia]1.3e-3776.79Show/hide
Query:  MAYRTIPSLL-LIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIP
        MAYRTI SLL ++ ++IL + GEA AARN R +SSI DDKKQPQWLVGYDGVSVL+PGIGRITL PYDKGS  G HAG YGSNPA   +YIPGGDDNFIP
Subjt:  MAYRTIPSLL-LIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIP

Query:  NPGFEVPIPANI
        NPGFEVP PANI
Subjt:  NPGFEVPIPANI

XP_022970746.1 putative cell wall protein [Cucurbita maxima]6.1e-4078.38Show/hide
Query:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN
        MA RTI SLL  F+VIL I GEAVAARN   RSSI DDKKQP+W+ G+DGVSVL+PGIGR TLSP+DKGS G G AG YGSNPAPRR+YIPGGDDNFIPN
Subjt:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN

Query:  PGFEVPIPANI
        PGFEVPIPA I
Subjt:  PGFEVPIPANI

XP_034206933.1 putative cell wall protein [Prunus dulcis]3.6e-1645.22Show/hide
Query:  LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDK-------------GSHGGGHAGLYGSNPAPRRRYIPGGDD
        L+ I +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PGIGR+ + P                GS GG  +   G  P+    Y+PGGDD
Subjt:  LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDK-------------GSHGGGHAGLYGSNPAPRRRYIPGGDD

Query:  NFIPNPGFEVPIPAN
         F+PNPG+EVPIP N
Subjt:  NFIPNPGFEVPIPAN

TrEMBL top hitse value%identityAlignment
A0A0A0KCX5 Uncharacterized protein1.4e-1854.95Show/hide
Query:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN
        MA+R IPS+L IFLVIL +TGEAVA                         VSVL+PGIGR+TLS        GGH+  YGSNPAPRR+YIPGGD NFIPN
Subjt:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN

Query:  PGFEVPIPANI
        PG+EV I A+I
Subjt:  PGFEVPIPANI

A0A314YGG0 Uncharacterized protein1.3e-1644.64Show/hide
Query:  LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPY----------DKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFI
        L+ + +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PGIGR+   P           D GS G       G  P+    Y+PGGDD F+
Subjt:  LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPY----------DKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFI

Query:  PNPGFEVPIPAN
        PNPG+EVP P N
Subjt:  PNPGFEVPIPAN

A0A5D3BC54 Putative cell wall protein5.6e-3167.57Show/hide
Query:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN
        MA+R  PSL  IFLVIL +TGEAVAAR+F            P+        SVL+PGIGRITLSPYDKGSHGGGH+  YGSNPAP+R+YIPGGDDNFIPN
Subjt:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN

Query:  PGFEVPIPANI
        PG+EVPIPANI
Subjt:  PGFEVPIPANI

A0A6J1CFL0 putative cell wall protein6.2e-3876.79Show/hide
Query:  MAYRTIPSLL-LIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIP
        MAYRTI SLL ++ ++IL + GEA AARN R +SSI DDKKQPQWLVGYDGVSVL+PGIGRITL PYDKGS  G HAG YGSNPA   +YIPGGDDNFIP
Subjt:  MAYRTIPSLL-LIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIP

Query:  NPGFEVPIPANI
        NPGFEVP PANI
Subjt:  NPGFEVPIPANI

A0A6J1I1F6 putative cell wall protein3.0e-4078.38Show/hide
Query:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN
        MA RTI SLL  F+VIL I GEAVAARN   RSSI DDKKQP+W+ G+DGVSVL+PGIGR TLSP+DKGS G G AG YGSNPAPRR+YIPGGDDNFIPN
Subjt:  MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPN

Query:  PGFEVPIPANI
        PGFEVPIPA I
Subjt:  PGFEVPIPANI

SwissProt top hitse value%identityAlignment
P47925 Putative cell wall protein7.1e-0731.97Show/hide
Query:  MAYRTIPSLLLIFLVILTI-TGEAVAARNFRGRSSIDDDKKQPQWLVGYD-GVSVLVPGIGRITLSPYDKGSH------------GGGHAGLYGSNPAPR
        MA   I S +++ ++ L + + E V+      +S    D K P +LV  +   ++L+PG+GR  L P  K               GGG     G   A  
Subjt:  MAYRTIPSLLLIFLVILTI-TGEAVAARNFRGRSSIDDDKKQPQWLVGYD-GVSVLVPGIGRITLSPYDKGSH------------GGGHAGLYGSNPAPR

Query:  RRYIPGGDDNFIPNPGFEVPIP
           +PGGDD  +PNPGFE P P
Subjt:  RRYIPGGDDNFIPNPGFEVPIP

Arabidopsis top hitse value%identityAlignment
AT2G20870.1 cell wall protein precursor, putative5.1e-0831.97Show/hide
Query:  MAYRTIPSLLLIFLVILTI-TGEAVAARNFRGRSSIDDDKKQPQWLVGYD-GVSVLVPGIGRITLSPYDKGSH------------GGGHAGLYGSNPAPR
        MA   I S +++ ++ L + + E V+      +S    D K P +LV  +   ++L+PG+GR  L P  K               GGG     G   A  
Subjt:  MAYRTIPSLLLIFLVILTI-TGEAVAARNFRGRSSIDDDKKQPQWLVGYD-GVSVLVPGIGRITLSPYDKGSH------------GGGHAGLYGSNPAPR

Query:  RRYIPGGDDNFIPNPGFEVPIP
           +PGGDD  +PNPGFE P P
Subjt:  RRYIPGGDDNFIPNPGFEVPIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTACAGAACCATACCTTCTCTGCTCCTTATCTTCCTCGTGATCCTCACAATAACTGGAGAAGCAGTTGCAGCGCGCAATTTTCGCGGAAGGTCGAGCATTGATGA
CGATAAGAAACAGCCTCAGTGGCTGGTTGGATATGATGGGGTCAGTGTGCTCGTTCCCGGCATTGGACGGATCACATTGTCACCATATGACAAAGGCAGTCATGGAGGAG
GGCATGCGGGTTTATATGGCAGTAACCCAGCTCCACGACGTCGATATATTCCAGGAGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAAT
ATTGATGAGACATTGTTATCTTTGGCTACCCCGTCAAGTGGCTCCAGTTTCGCCATTATTGAAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTACAGAACCATACCTTCTCTGCTCCTTATCTTCCTCGTGATCCTCACAATAACTGGAGAAGCAGTTGCAGCGCGCAATTTTCGCGGAAGGTCGAGCATTGATGA
CGATAAGAAACAGCCTCAGTGGCTGGTTGGATATGATGGGGTCAGTGTGCTCGTTCCCGGCATTGGACGGATCACATTGTCACCATATGACAAAGGCAGTCATGGAGGAG
GGCATGCGGGTTTATATGGCAGTAACCCAGCTCCACGACGTCGATATATTCCAGGAGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAAT
ATTGATGAGACATTGTTATCTTTGGCTACCCCGTCAAGTGGCTCCAGTTTCGCCATTATTGAAGCTTAG
Protein sequenceShow/hide protein sequence
MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPAN
IDETLLSLATPSSGSSFAIIEA