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Clc02G18480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G18480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein indeterminate-domain 1-like
Genome locationClcChr02:31042822..31045309
RNA-Seq ExpressionClc02G18480
SyntenyClc02G18480
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044762.1 protein indeterminate-domain 1-like [Cucumis melo var. makuwa]5.3e-0884.62Show/hide
Query:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
        RRDSFI H AFCD LTKE AGSLSPAAAE PNLE DPQV
Subjt:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
XP_004149169.1 zinc finger protein ENHYDROUS [Cucumis sativus]4.5e-0782.05Show/hide
Query:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
        RRDSFI H AFCD LTKE AGSLSPAAAE PNLE D QV
Subjt:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
XP_008453721.1 PREDICTED: protein indeterminate-domain 1-like [Cucumis melo]5.3e-0884.62Show/hide
Query:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
        RRDSFI H AFCD LTKE AGSLSPAAAE PNLE DPQV
Subjt:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
XP_022136443.1 protein indeterminate-domain 1-like [Momordica charantia]3.4e-0748.91Show/hide
Query:  GVKRH--------KGTCDKF--LYAKTSSFLQLHWQV--TIFHGNSRNGLAKRRDSFIIHTAFCDALTKE-AAGSLSPAAAENPNLECDPQV
        G+K+H        K  CDK    YA  S + + H+++  T  +      +  RRDSFI H AFCD LTKE AAGS SPAAAENPNLE DP+V
Subjt:  GVKRH--------KGTCDKF--LYAKTSSFLQLHWQV--TIFHGNSRNGLAKRRDSFIIHTAFCDALTKE-AAGSLSPAAAENPNLECDPQV
XP_038877290.1 zinc finger protein ENHYDROUS-like [Benincasa hispida]6.2e-0987.18Show/hide
Query:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
        RRDSFI H AFCDALTKEAAGSLSP AAE+PNLE DPQV
Subjt:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
TrEMBL top hitse value%identityAlignment
A0A1S3BXQ7 protein indeterminate-domain 1-like2.6e-0884.62Show/hide
Query:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
        RRDSFI H AFCD LTKE AGSLSPAAAE PNLE DPQV
Subjt:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
A0A5A7TN61 Protein indeterminate-domain 1-like2.6e-0884.62Show/hide
Query:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
        RRDSFI H AFCD LTKE AGSLSPAAAE PNLE DPQV
Subjt:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
A0A5D3CXM3 Protein indeterminate-domain 1-like2.6e-0884.62Show/hide
Query:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
        RRDSFI H AFCD LTKE AGSLSPAAAE PNLE DPQV
Subjt:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
A0A6J1C7K5 protein indeterminate-domain 1-like1.7e-0748.91Show/hide
Query:  GVKRH--------KGTCDKF--LYAKTSSFLQLHWQV--TIFHGNSRNGLAKRRDSFIIHTAFCDALTKE-AAGSLSPAAAENPNLECDPQV
        G+K+H        K  CDK    YA  S + + H+++  T  +      +  RRDSFI H AFCD LTKE AAGS SPAAAENPNLE DP+V
Subjt:  GVKRH--------KGTCDKF--LYAKTSSFLQLHWQV--TIFHGNSRNGLAKRRDSFIIHTAFCDALTKE-AAGSLSPAAAENPNLECDPQV
A0A6J1JBR9 protein indeterminate-domain 1-like2.2e-0782.05Show/hide
Query:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
        RRDSFI H AFCDALTKEAA +LSPA AE PNLE DPQV
Subjt:  RRDSFIIHTAFCDALTKEAAGSLSPAAAENPNLECDPQV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGAGGTAGTTACCAGAGTTGGTCATTTGAGGTGGTTGTCAAAGCATGTCATTGACGATGATTGTCGTTGGAGTTGGTCATCAGCAATGGCTGATGATCTTTCCAT
AAGCGCTTTTATGATTTTTGACTCGCCCTTACAAATGTCATCCATTCCTGATAGAGTTCATACGTTTGTGAGGGGTGGAGTTAAAAGACATAAAGGCACTTGTGACAAGT
TCCTGTATGCAAAAACCTCGTCTTTTCTTCAACTTCACTGGCAAGTTACAATCTTCCATGGAAACTCCAGGAACGGACTAGCAAAGAGAAGAGATAGTTTCATCATTCAC
ACAGCCTTCTGTGATGCGTTGACGAAGGAGGCAGCCGGAAGTCTGTCTCCAGCGGCGGCGGAAAATCCTAATTTGGAGTGTGATCCCCAAGTTCCAGTCGTTAGTGTATT
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGAGGTAGTTACCAGAGTTGGTCATTTGAGGTGGTTGTCAAAGCATGTCATTGACGATGATTGTCGTTGGAGTTGGTCATCAGCAATGGCTGATGATCTTTCCAT
AAGCGCTTTTATGATTTTTGACTCGCCCTTACAAATGTCATCCATTCCTGATAGAGTTCATACGTTTGTGAGGGGTGGAGTTAAAAGACATAAAGGCACTTGTGACAAGT
TCCTGTATGCAAAAACCTCGTCTTTTCTTCAACTTCACTGGCAAGTTACAATCTTCCATGGAAACTCCAGGAACGGACTAGCAAAGAGAAGAGATAGTTTCATCATTCAC
ACAGCCTTCTGTGATGCGTTGACGAAGGAGGCAGCCGGAAGTCTGTCTCCAGCGGCGGCGGAAAATCCTAATTTGGAGTGTGATCCCCAAGTTCCAGTCGTTAGTGTATT
TTGA
Protein sequenceShow/hide protein sequence
MSEVVTRVGHLRWLSKHVIDDDCRWSWSSAMADDLSISAFMIFDSPLQMSSIPDRVHTFVRGGVKRHKGTCDKFLYAKTSSFLQLHWQVTIFHGNSRNGLAKRRDSFIIH
TAFCDALTKEAAGSLSPAAAENPNLECDPQVPVVSVF