; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G20660 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G20660
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionselT-like protein
Genome locationClcChr02:33103046..33105252
RNA-Seq ExpressionClc02G20660
SyntenyClc02G20660
Gene Ontology termsNA
InterPro domainsIPR019389 - Selenoprotein T


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2980256.1 Hypothetical predicted protein [Olea europaea subsp. europaea]2.1e-0536.45Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPL--VYHHSNESENRRLFKTGKAARMDQLANLNRT---YHNTILIKFSSQCSYRGTATSIKLMVIQ
        MDR   L+  L L +FC DI   FS  P   ++ PL   +HH ++S +  L +  +     +  +   +     NT+ I F S CSYRGTA ++K M+  
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPL--VYHHSNESENRRLFKTGKAARMDQLANLNRT---YHNTILIKFSSQCSYRGTATSIKLMVIQ

Query:  NFPGINV
         FPGINV
Subjt:  NFPGINV

GFP92178.1 selt-like protein [Phtheirospermum japonicum]2.1e-0535.77Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSN-----------ESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSI
        MDR   L+  L L +FC DI+  FS  P    + P  +HH +           + +    F T KA  +         Y NTI I F S CSYRGTA ++
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSN-----------ESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSI

Query:  KLMVIQNFPGINVFCKQQAGRFP
        K M+   FPGINV        FP
Subjt:  KLMVIQNFPGINVFCKQQAGRFP

KAG8377034.1 hypothetical protein BUALT_Bualt09G0126100 [Buddleja alternifolia]1.6e-0537.04Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHS------NESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVI
        MDR   L+  L L +FC DI++ FS  PP   + P  +HH       +  +    F T KA+ +         + NT+ I F S CSYRGTA ++K M+ 
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHS------NESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVI

Query:  QNFPGINV
          FPG+NV
Subjt:  QNFPGINV

XP_022148433.1 selT-like protein [Momordica charantia]4.1e-1750Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQ--LANLNRT--------------------YHNTILIKFSS
        MDR + L+ LL LSVFCFDIY FFST PP  SS  LV+HH + +   + F     A+++Q   ANLNRT                      +TILIKFSS
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQ--LANLNRT--------------------YHNTILIKFSS

Query:  QCSYRGTATSIKLMVIQNFPGINV
         CSYRGT+ SIKL+V++NFPGINV
Subjt:  QCSYRGTATSIKLMVIQNFPGINV

XP_042052869.1 selT-like protein [Salvia splendens]1.6e-0536.27Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPGI
        MDR   L+  L L +FC DI+  F+   P   + P  YHH +      +                  Y NT+ I F S CSYRGTA ++K M+   FPGI
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPGI

Query:  NV
        NV
Subjt:  NV

TrEMBL top hitse value%identityAlignment
A0A484KZU7 Uncharacterized protein3.0e-0538.46Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSN-----ESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQ
        M R   LM  L L +FC DI   FS  PPL    P VYHHS      +      F T  A+       L     NT+ I F S CSYRGTA ++K M+  
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSN-----ESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQ

Query:  NFPGINVFCKQQAGRFP
         FPGI+V         P
Subjt:  NFPGINVFCKQQAGRFP

A0A484LTK6 Uncharacterized protein3.0e-0537.07Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRT----YHNTILIKFSSQCSYRGTATSIKLMVIQN
        M R   LM  L L +FC DI   FS  PPL    P VYHHS  +    + +  +       +   RT      NT+ I F S CSYRGTA ++K M+   
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRT----YHNTILIKFSSQCSYRGTATSIKLMVIQN

Query:  FPGINVFCKQQAGRFP
        FPGI+V         P
Subjt:  FPGINVFCKQQAGRFP

A0A4D9AF78 Uncharacterized protein7.9e-0636.27Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPGI
        MDR   L+  L L +FC DI+  F+   P   + P  YHH +      +                  Y NT+ I F S CSYRGTA ++K M+   FPGI
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPGI

Query:  NV
        NV
Subjt:  NV

A0A5A7RAX3 Selenoprotein t3.0e-0533.33Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRT--------YHNTILIKFSSQCSYRGTATSIKLM
        MDR   L+  L L + C DI+  FS  PP   + P  +HH ++ ++ R     +     Q  +L           + N+I I F S CSYRGTA ++K M
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRT--------YHNTILIKFSSQCSYRGTATSIKLM

Query:  VIQNFPGINVFCKQQAGRFP
        +   FPG+NV        FP
Subjt:  VIQNFPGINVFCKQQAGRFP

A0A6J1D431 selT-like protein2.0e-1750Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQ--LANLNRT--------------------YHNTILIKFSS
        MDR + L+ LL LSVFCFDIY FFST PP  SS  LV+HH + +   + F     A+++Q   ANLNRT                      +TILIKFSS
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQ--LANLNRT--------------------YHNTILIKFSS

Query:  QCSYRGTATSIKLMVIQNFPGINV
         CSYRGT+ SIKL+V++NFPGINV
Subjt:  QCSYRGTATSIKLMVIQNFPGINV

SwissProt top hitse value%identityAlignment
Q9STZ2 SelT-like protein4.2e-0431.07Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRL-FKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPG
        MD+   ++  L + + C D+++ F+  PP +       H S  S +  L F   K+  +         Y NT+ I F   CSY+GTA S+K M+   FPG
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRL-FKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPG

Query:  INV
        ++V
Subjt:  INV

Arabidopsis top hitse value%identityAlignment
AT3G47300.1 SELT-like protein precursor3.0e-0531.07Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRL-FKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPG
        MD+   ++  L + + C D+++ F+  PP +       H S  S +  L F   K+  +         Y NT+ I F   CSY+GTA S+K M+   FPG
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRL-FKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPG

Query:  INV
        ++V
Subjt:  INV

AT5G58640.1 Selenoprotein, Rdx type1.1e-0428.18Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNS--------SIPLVYHHSNESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLM
        MDR   ++  L + +FC D+++ F+  PP            IP  +  +        F + K + +         Y NT+ I F   CSY+GTA ++K M
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPLNS--------SIPLVYHHSNESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLM

Query:  VIQNFPGINV
        +   FPG++V
Subjt:  VIQNFPGINV

AT5G58640.2 Selenoprotein, Rdx type1.5e-0429.52Show/hide
Query:  MDRGISLMALLLLSVFCFDIYDFFSTDPPL-NSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRT--YHNTILIKFSSQCSYRGTATSIKLMVIQNF
        MDR   ++  L + +FC D+++ F+  PP      P    H                   Q + L     Y NT+ I F   CSY+GTA ++K M+   F
Subjt:  MDRGISLMALLLLSVFCFDIYDFFSTDPPL-NSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRT--YHNTILIKFSSQCSYRGTATSIKLMVIQNF

Query:  PGINV
        PG++V
Subjt:  PGINV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGAGGAATTTCGCTCATGGCATTGTTACTGCTCTCTGTTTTCTGTTTCGATATTTACGATTTCTTCTCTACTGATCCGCCTCTAAATTCATCGATTCCTCTCGT
TTATCATCACTCAAACGAATCAGAAAATCGCCGCCTGTTTAAAACAGGGAAAGCAGCCAGAATGGATCAACTAGCGAATTTGAATCGGACATACCACAATACGATTCTCA
TCAAATTCAGCTCTCAGTGTTCTTACAGAGGGACTGCCACATCGATTAAGTTGATGGTGATACAGAATTTTCCTGGAATCAACGTGTTCTGTAAACAGCAGGCGGGAAGA
TTTCCCATGGCGAAGGAGATGAAAGAAATCATTTGTCGTCAACTTGCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGAGGAATTTCGCTCATGGCATTGTTACTGCTCTCTGTTTTCTGTTTCGATATTTACGATTTCTTCTCTACTGATCCGCCTCTAAATTCATCGATTCCTCTCGT
TTATCATCACTCAAACGAATCAGAAAATCGCCGCCTGTTTAAAACAGGGAAAGCAGCCAGAATGGATCAACTAGCGAATTTGAATCGGACATACCACAATACGATTCTCA
TCAAATTCAGCTCTCAGTGTTCTTACAGAGGGACTGCCACATCGATTAAGTTGATGGTGATACAGAATTTTCCTGGAATCAACGTGTTCTGTAAACAGCAGGCGGGAAGA
TTTCCCATGGCGAAGGAGATGAAAGAAATCATTTGTCGTCAACTTGCTGGTTGA
Protein sequenceShow/hide protein sequence
MDRGISLMALLLLSVFCFDIYDFFSTDPPLNSSIPLVYHHSNESENRRLFKTGKAARMDQLANLNRTYHNTILIKFSSQCSYRGTATSIKLMVIQNFPGINVFCKQQAGR
FPMAKEMKEIICRQLAG