CuGenDBv2

Gene ID	Clc02G20680
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	30S ribosomal protein S18
Genome location	ClcChr02:33120234..33121327
RNA-Seq Expression	Clc02G20680
Synteny	Clc02G20680
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005763 - mitochondrial small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570652.1 hypothetical protein SDJN03_29567, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-69

90.85

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        MRTVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFGGVS+ D GN+AFFEKLDR+GKPRE IGSRLSGGNNF S Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        GL+DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

KAG7010502.1 rpsR [Cucurbita argyrosperma subsp. argyrosperma]

9.0e-70

92.05

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        MRTVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFGGVS+ DSGN+AFFEKLDR+GKPRE IGSRLSGGNNF S Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYE
        GL+DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYE

XP_022943865.1 uncharacterized protein LOC111448465 [Cucurbita moschata]

2.4e-70

91.5

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        MRTVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFGGVS+ DSGN+AFFEKLDR+GKPRE IGSRLSGGNNF S Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        GL+DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

XP_022986919.1 uncharacterized protein LOC111484513 [Cucurbita maxima]

2.0e-69

90.85

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        M TVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFGGVS+ DSGN+AFFEKLDRLGKPRE IGSRLSGGNNF + Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        GL+DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

XP_023512473.1 uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo]

1.2e-69

91.5

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        MRTVQVALRTLG GLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFGGVS+ DSGN+AFFEKLDRLGKPRE IGSRLSGGNNF S Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        GL+DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D4R9 uncharacterized protein LOC111017003

6.5e-66

84.31

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        MRTVQ ALR+LGGGLS+R KQ  +LR+LSTNAAR++GFDD+K KPDSFESADDFERRIFGGVS  DSGNEAFFEKLDRLGKPRE +GSRLSGGNNF + Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        GL+D LNTLSDGMDGKLKKA+TYFEFDPEEI+KDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

A0A6J1FYC1 uncharacterized protein LOC111448465

1.1e-70

91.5

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        MRTVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFGGVS+ DSGN+AFFEKLDR+GKPRE IGSRLSGGNNF S Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        GL+DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

A0A6J1G586 uncharacterized protein LOC111451027 isoform X1

3.2e-65

84.31

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        MR VQVA RT+GGG++R+ KQP  LRNLSTNAARD  FDD+ GK +SFESADDFERRIFGGVS  DSGN+AFFEKLDRLGKPRE IGSRLSGGNNF + Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        G+EDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

A0A6J1G5B3 uncharacterized protein LOC111451027 isoform X2

3.2e-65

84.31

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        MR VQVA RT+GGG++R+ KQP  LRNLSTNAARD  FDD+ GK +SFESADDFERRIFGGVS  DSGN+AFFEKLDRLGKPRE IGSRLSGGNNF + Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        G+EDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

A0A6J1JHF0 uncharacterized protein LOC111484513

9.7e-70

90.85

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY
        M TVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFGGVS+ DSGN+AFFEKLDRLGKPRE IGSRLSGGNNF + Y
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFY

Query:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK
        GL+DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE K
Subjt:  GLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G07210.1 Ribosomal protein S18

6.1e-08

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Query:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGI-------GSRLSGG
        M   + A R+L      R  +P V R+L+TNA      +D      SF+S+D+ +  +FG  +  D  +  FF+ L +  K +          GSR SGG
Subjt:  MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGI-------GSRLSGG

Query:  NNFHSFYGLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMS
         +       ++  +  SDG+DGKLK+A+  +  D  +  K +Y+FR D +
Subjt:  NNFHSFYGLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMS

Sequences

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CDS sequence

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ATGGGCGAGCCCAAGATGGTCATTTATCTTCGGCCTTTTGACTCAACTTTCGTACGGGCGTTTAGGCGAACTGGGCCTATGTCAAGTGTCTTGTTGGGCCTCTCAAGGCC
CATTTCTCCCCTTTCAGTTTCCCCTTTCACCTTCGCCGATTTCACTTCCCTTCGTGTCGATCTTCTCATCTCCCTCACCTCACCGCTTCCAACTTTTTTCCCTCACCGTC
GATCTACCCACGGCGGCTCTCTCATTCCACTCCGTCGACCTTCCTCCGTCTCTCTCGTCTACCTCTCTGTCTTTCTCTGCTTTTTAATCTCAGATCAGTGGCAGCTCTGC
TACTTCTTCGTTCCGTGCGAAATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTATGTGCTCAGAAACCTTTCCAC
AAACGCCGCTCGTGATAGTGGATTTGATGATGATAAGGGAAAACCTGATTCGTTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTCGGCCGATT
CTGGAAATGAGGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAGGAATAGGTTCGAGATTGAGTGGAGGAAACAATTTTCATTCGTTCTATGGTCTTGAA
GATAATCTTAACACGCTATCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGCAAAAGATGATTATACTTTCAGAGC
AGATATGTCTTTTAAGCCTGGATCAACATACGAAACCAAGGCATGTAGCTGA

mRNA sequence

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Protein sequence

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MGEPKMVIYLRPFDSTFVRAFRRTGPMSSVLLGLSRPISPLSVSPFTFADFTSLRVDLLISLTSPLPTFFPHRRSTHGGSLIPLRRPSSVSLVYLSVFLCFLISDQWQLC
YFFVPCEMRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSADSGNEAFFEKLDRLGKPREGIGSRLSGGNNFHSFYGLE
DNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETKACS

Clc02G20680 (gene) of Watermelon (cordophanus) v2 genome