CuGenDBv2

Gene ID	Clc02G20690
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosomal protein S18
Genome location	ClcChr02:33121627..33122953
RNA-Seq Expression	Clc02G20690
Synteny	Clc02G20690
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18 IPR036870 - Ribosomal protein S18 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022148322.1 uncharacterized protein LOC111017003 [Momordica charantia]

3.3e-48

73.33

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E I+DLDLRKPGVRKPPKRVEFQV TEEVL+KADFRNVRFLANFITDAGII KRSK                         TGISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTK+F+FG+TME+LDKD+EYEVFD+ ADAD G PLGS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

XP_022947026.1 uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]

2.2e-47

73.33

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGII KRSK                         TGISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTKSF+FG+TME LDKD+EYEVF++N DAD GRP GS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

XP_022986919.1 uncharacterized protein LOC111484513 [Cucurbita maxima]

1.8e-46

73.33

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGIIIKRSK                         T ISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTKSF+FG+TME+LDKD+EYEVFD+N   DGG PLGS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

XP_023512473.1 uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo]

4.1e-46

72.67

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E ++DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGIIIKRSK                         T ISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTKSF+FG+TME+LDKD+EYEVFD+N   DGG PLGS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

XP_023532312.1 uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo]

2.2e-47

73.33

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGII KRSK                         TGISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTKSF+FG+TME LDKD+EYEVF++N DAD GRP GS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D4R9 uncharacterized protein LOC111017003

1.6e-48

73.33

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E I+DLDLRKPGVRKPPKRVEFQV TEEVL+KADFRNVRFLANFITDAGII KRSK                         TGISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTK+F+FG+TME+LDKD+EYEVFD+ ADAD G PLGS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

A0A6J1FYC1 uncharacterized protein LOC111448465

9.8e-46

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E ++DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGIIIKRSK                         T ISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTKSF+FG+TME+LDKD+EYEVFD+N   DG  PLGS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

A0A6J1G586 uncharacterized protein LOC111451027 isoform X1

1.0e-47

73.33

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGII KRSK                         TGISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTKSF+FG+TME LDKD+EYEVF++N DAD GRP GS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

A0A6J1JHF0 uncharacterized protein LOC111484513

8.9e-47

73.33

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGIIIKRSK                         T ISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMPFTTMGTKSF+FG+TME+LDKD+EYEVFD+N   DGG PLGS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

A0A6J1KYL3 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912

1.8e-44

70.67

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Query:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
        ST E I+DLDL KPGVRK PKRVEF V TEEVLR ADFRNVRFLANFITDAGII KRSK                         TGISAKAQRKVAREIK
Subjt:  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK

Query:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
        TARAFGLMP TTMGTKSF+FG+TME LDKD+EYEVF++N DAD GRP GS
Subjt:  TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G07210.1 Ribosomal protein S18

1.1e-33

64.17

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Query:  QVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGRTME
        +V TEEVL+ ADFRNVRFLANFIT+AGIIIKR                          QTGISAKAQRK+AREIKTARAFGLMPFTTMGTK+F FG+TME
Subjt:  QVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGRTME

Query:  NLDKDFEYEVFDDNADADGG
        N D+DFEYEV DD+ + D G
Subjt:  NLDKDFEYEVFDDNADADGG

Sequences

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CDS sequence

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ATGATTTTGTGTTACGTTACCATTATTCTAAGTACTTTAGAATGTATACAGGATCTGGATCTAAGAAAGCCAGGTGTACGTAAGCCCCCCAAAAGGGTTGAGTTTCAGGT
GAAAACGGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCAAACTTTATAACTGATGCCGGGATCATTATCAAGAGGAGCAAGGTAAACTTCTTGA
ACAACAATGAACAAGTTGAATTATCAACCTTTGTCTTATGTTATCGCTTCAACACTTCACAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAA
ACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACAAAATCATTTATTTTTGGCAGAACCATGGAAAATCTTGATAAGGACTTCGAGTATGAAGTTTTCGA
CGATAATGCTGATGCAGATGGGGGTCGCCCGCTTGGATCCTAA

mRNA sequence

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Protein sequence

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MILCYVTIILSTLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIK
TARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS

Clc02G20690 (gene) of Watermelon (cordophanus) v2 genome