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Clc02G21010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G21010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationClcChr02:33382392..33384392
RNA-Seq ExpressionClc02G21010
SyntenyClc02G21010
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]2.9e-3440.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+F+R+FS+SSPSTSSSNPNASP SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H     
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                                                                                            
Subjt:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A    TPI EAPKKISGVHKRCWKYIASLP  GESK+  SAEVQTS
Subjt:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

XP_008464074.1 PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]5.0e-3440.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H     
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                                                                                            
Subjt:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

XP_022148301.1 uncharacterized protein LOC111016988 [Momordica charantia]6.1e-3287.91Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        M+VANR AITRALDFS+ SSTFIR+FSTSSPSTSSSNPNAS ASS  KRR KKKNLFEV QFLP WGVGYHVAKAHWDEISYQITKINLYK
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]1.2e-3084.62Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV QFLPNWGVGYHVAKAHWDEISYQITKINLYK
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]3.4e-0658.33Show/hide
Query:  KSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
        K+  +A     PIAEAPKKISGVHKRCWKYI SL    E+         +SNPSAEVQTS
Subjt:  KSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]2.4e-3643.1Show/hide
Query:  VANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRC
        VANRTAI+RALDFSR SSTFIR+FSTSSPSTSSSNPNAS AS+KNKRR KKKNLFEV QFLPNWGVGYHVAKAHWDEISYQITKINLYK           
Subjt:  VANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRC

Query:  MLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLLTK
                                              NG     T G                                                    
Subjt:  MLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLLTK

Query:  MVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                               K+  +A    TPIAEAPKKISGVHKRCWKYIASLP  GE  SNPSAEVQTS
Subjt:  MVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein1.4e-3440.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+F+R+FS+SSPSTSSSNPNASP SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H     
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                                                                                            
Subjt:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A    TPI EAPKKISGVHKRCWKYIASLP  GESK+  SAEVQTS
Subjt:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

A0A1S3CKN2 uncharacterized protein LOC1035020492.4e-3440.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H     
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                                                                                            
Subjt:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

A0A5A7V0Y6 Uncharacterized protein2.4e-3440.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H     
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                                                                                            
Subjt:  RCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  TKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

A0A6J1D4Z3 uncharacterized protein LOC1110169883.0e-3287.91Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        M+VANR AITRALDFS+ SSTFIR+FSTSSPSTSSSNPNAS ASS  KRR KKKNLFEV QFLP WGVGYHVAKAHWDEISYQITKINLYK
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK

A0A6J1KZ28 uncharacterized protein LOC1115000235.6e-3184.62Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV QFLPNWGVGYHVAKAHWDEISYQITKINLYK
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK

A0A6J1KZ28 uncharacterized protein LOC1115000231.6e-0658.33Show/hide
Query:  KSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
        K+  +A     PIAEAPKKISGVHKRCWKYI SL    E+         +SNPSAEVQTS
Subjt:  KSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein6.3e-1956.99Show/hide
Query:  MPMAVANRT-AITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        M M + NR  + T  +   R S   +R+FS    + +S NP++   SSK KRRKKKNL EVAQFLPNWG+GYH+AKAHW+ ISY+ITKINLYK
Subjt:  MPMAVANRT-AITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK

AT5G52370.1 unknown protein6.8e-0560.53Show/hide
Query:  AEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        AEAPKKISGVHKRCWKYI +L     + +  SA VQ +
Subjt:  AEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

AT5G58990.1 unknown protein3.7e-1957.29Show/hide
Query:  MPMAVANRTAITRALDFSRF--SSTFIRSFSTSSPSTSSSNPNASPASSKN--KRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        M M + NR AI+R      F  S + +R+FS ++PS +S+  + +P+S  N  KRRKKKNL EVAQFLPNWG+GYH+AKAHW+ ISY+ITKINLYK
Subjt:  MPMAVANRTAITRALDFSRF--SSTFIRSFSTSSPSTSSSNPNASPASSKN--KRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK

AT5G58990.1 unknown protein4.0e-0560.98Show/hide
Query:  AEAPKKISGVHKRCWKYIASLPSLGESKSNP---SAEVQTS
        AEAPKKISGVHKRCWKYI +L     SK+ P   +A+VQ +
Subjt:  AEAPKKISGVHKRCWKYIASLPSLGESKSNP---SAEVQTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATGGCTGTCGCCAACAGAACTGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACCTCCTC
TTCAAACCCCAATGCCTCGCCTGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGCTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCG
CCAAAGCTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGGTTTGTTTTCATTTGGTTTCTTTTATTAGATGTATGTTGCGGTTCATTGGAGAA
CAATCTCCCTCTATAGTCTGCCGAAATTTTGAAAAAAATGGTATTCAGTTTCTTCCAGTCGTTACCATTTCTTGTATGCATTCAAGTAAATTGAACGGGTTGAGGGTTTT
AAAGACTTTGGGGGCGTTTGACATCTTTCCTATGACAATTGATAATCAAACAGGAAGTGTAACAATCTATTTTCTTTTGGGTCAATCTGATTCAGGGTGTAAGTTTTTCT
TTTGGCTTTTTTCTTACAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAAAATGGTTAGTGATTATATATCAAAAATGAAATATCAATCTCATCGATCTCAT
AAGTATCATACCAAATCTCATCAATCGAATCACTTTTTCGAGAAATACGAGATATCTAAGTCATACAAGTCAAGTAACTTAGCCCCCTTTAGAAGCACACCCATTGCCGA
AGCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGTAACCCATCAGCTGAAGTTCAAACTTCAT
GA
mRNA sequenceShow/hide mRNA sequence
ATGCCAATGGCTGTCGCCAACAGAACTGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACCTCCTC
TTCAAACCCCAATGCCTCGCCTGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGCTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCG
CCAAAGCTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGGTTTGTTTTCATTTGGTTTCTTTTATTAGATGTATGTTGCGGTTCATTGGAGAA
CAATCTCCCTCTATAGTCTGCCGAAATTTTGAAAAAAATGGTATTCAGTTTCTTCCAGTCGTTACCATTTCTTGTATGCATTCAAGTAAATTGAACGGGTTGAGGGTTTT
AAAGACTTTGGGGGCGTTTGACATCTTTCCTATGACAATTGATAATCAAACAGGAAGTGTAACAATCTATTTTCTTTTGGGTCAATCTGATTCAGGGTGTAAGTTTTTCT
TTTGGCTTTTTTCTTACAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAAAATGGTTAGTGATTATATATCAAAAATGAAATATCAATCTCATCGATCTCAT
AAGTATCATACCAAATCTCATCAATCGAATCACTTTTTCGAGAAATACGAGATATCTAAGTCATACAAGTCAAGTAACTTAGCCCCCTTTAGAAGCACACCCATTGCCGA
AGCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGTAACCCATCAGCTGAAGTTCAAACTTCAT
GA
Protein sequenceShow/hide protein sequence
MPMAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGE
QSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLLTKMVSDYISKMKYQSHRSH
KYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS