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Clc02G21060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G21060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTropomyosin
Genome locationClcChr02:33427738..33428055
RNA-Seq ExpressionClc02G21060
SyntenyClc02G21060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]1.5e-2882.35Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KSR+G+K GKHSS SDSSGNGN+GDA A   A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG GG
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GG
         G
Subjt:  GG

KAE8645885.1 hypothetical protein Csa_017706 [Cucumis sativus]8.1e-2779.61Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KS + +K GKHSSSSDSSGNGN G+  A   A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG G 
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GGD
        GGD
Subjt:  GGD

KAG6570682.1 hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2783.02Show/hide
Query:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFD-DDGGSTHAHGGEGG
        MESSKICFCIPRHKN HK DGG EKSSKSK SR KS  GAK GKHSSSSDSSGNGNTG ASA  SAA  AVAA+AVTAVT DA D DDGGSTH HGGEGG
Subjt:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFD-DDGGSTHAHGGEGG

Query:  GGGGGD
        GGGGGD
Subjt:  GGGGGD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-2883.96Show/hide
Query:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFD-DDGGSTHAHGGEGG
        MESSKICFCIPRHKN HK DGG EKSSKSK SR KS  GAK GKHSSSSDSSGNGNTGDASA  SAA  AVAA+AVTAVT DA D DDGGSTH HGGEGG
Subjt:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFD-DDGGSTHAHGGEGG

Query:  GGGGGD
        GGGGGD
Subjt:  GGGGGD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]1.5e-2882.35Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KSR+G+K GKHSS SDSSGNGN+GDA A   A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG GG
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GG
         G
Subjt:  GG

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein3.9e-2779.61Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KS + +K GKHSSSSDSSGNGN G+  A   A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG G 
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GGD
        GGD
Subjt:  GGD

A0A5A7V5U9 Tropomyosin7.1e-2982.35Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KSR+G+K GKHSS SDSSGNGN+GDA A   A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG GG
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GG
         G
Subjt:  GG

A0A5D3CVK1 Tropomyosin7.1e-2982.35Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KSR+G+K GKHSS SDSSGNGN+GDA A   A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG GG
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GG
         G
Subjt:  GG

A0A6J1D515 circumsporozoite protein-like1.5e-2371.3Show/hide
Query:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASA---GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGE
        MES+KICFCIPRHKNGHKA+GG EKSSKSK SR KSR+G KGGKHSSSSDSSG+GNT   +A   GS AA  AV  +  TA T DA +DDGGS H HGG 
Subjt:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASA---GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGE

Query:  GGGGGGGD
        GG GGGGD
Subjt:  GGGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCG
CCAAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCCGTGGCTGCTG
TTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGGGGTGGTGGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCG
CCAAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCCGTGGCTGCTG
TTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGGGGTGGTGGAGATTAG
Protein sequenceShow/hide protein sequence
MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGGD