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Clc02G21090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G21090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMajor viral transcription factor
Genome locationClcChr02:33448334..33449341
RNA-Seq ExpressionClc02G21090
SyntenyClc02G21090
Gene Ontology termsNA
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061869.1 uncharacterized protein E6C27_scaffold89G001110 [Cucumis melo var. makuwa]9.7e-5287.2Show/hide
Query:  MENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPGGWQHPAV
        MENE + RLPKPPTRLQKQAPASLHLDQLSS SMSS S DT SKAILPLLSPLPLSPQPLPEIDGNRIS  GNA + GGGN DQRGIGF APGGWQHPAV
Subjt:  MENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPGGWQHPAV

Query:  AATFADPSTLFTFFQSQCIVTSNTP
        AATF DPSTLFTFFQSQCIV+SNTP
Subjt:  AATFADPSTLFTFFQSQCIVTSNTP

KAG6605440.1 hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sororia]6.9e-5077.14Show/hide
Query:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR
        MNANQ  VVDF   +ME EH++RLPKPPTRLQKQAPASLHLDQL+S SMSSGS D  SKAILPLLSPLP SPQP PE +GNR + NGN  D G G  DQR
Subjt:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR

Query:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP
        GI FA PGGWQHPAVA TFADPSTLFTFFQSQCIV S TP
Subjt:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP

XP_011657141.1 uncharacterized protein LOC105435808 [Cucumis sativus]1.5e-6087.86Show/hide
Query:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR
        M+ANQTVVVDFLRGSMENE++ RLPKPPTRLQKQAPASLHLDQLSS SMSS S D  SKAILPLLSPLPLSPQPLPEIDGNRIS NGNA D GGGN DQR
Subjt:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR

Query:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP
        GIGF APGGWQHPAVAATF DPSTLFTFFQSQC+V+SNTP
Subjt:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP

XP_023512816.1 uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo]3.4e-4974.29Show/hide
Query:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR
        MNANQ+ VVDFLR +M+NE   R+PKPPTRLQKQAPA L+LDQLSS SMSS  T+  SK +LPLLSPLP SPQP  E +GNR+  NGN A D GGN DQR
Subjt:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR

Query:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP
        GI FA+PGGWQHPAVAAT+ADPSTLFTFFQS+CI+TSNTP
Subjt:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP

XP_038902307.1 uncharacterized protein LOC120088941 [Benincasa hispida]3.4e-6593.57Show/hide
Query:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR
        MNANQTVV+DFLRGSMENEH+ARLPKPPTRLQKQAPASLHLDQLSS SMSSGS DT SKAILPLLSPLPLSPQPLPEIDGNRIS NGNAAD GGGN DQR
Subjt:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR

Query:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP
        GIGFAAPGGWQHPAVAATF DPSTLFTFFQSQCIVTSNTP
Subjt:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP

TrEMBL top hitse value%identityAlignment
A0A0A0KBQ7 Uncharacterized protein7.2e-6187.86Show/hide
Query:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR
        M+ANQTVVVDFLRGSMENE++ RLPKPPTRLQKQAPASLHLDQLSS SMSS S D  SKAILPLLSPLPLSPQPLPEIDGNRIS NGNA D GGGN DQR
Subjt:  MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQR

Query:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP
        GIGF APGGWQHPAVAATF DPSTLFTFFQSQC+V+SNTP
Subjt:  GIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP

A0A5A7V856 Uncharacterized protein4.7e-5287.2Show/hide
Query:  MENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPGGWQHPAV
        MENE + RLPKPPTRLQKQAPASLHLDQLSS SMSS S DT SKAILPLLSPLPLSPQPLPEIDGNRIS  GNA + GGGN DQRGIGF APGGWQHPAV
Subjt:  MENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPGGWQHPAV

Query:  AATFADPSTLFTFFQSQCIVTSNTP
        AATF DPSTLFTFFQSQCIV+SNTP
Subjt:  AATFADPSTLFTFFQSQCIVTSNTP

A0A6J1D5B7 uncharacterized protein LOC1110170711.2e-2668.87Show/hide
Query:  MNANQTVVVDFLRGSMENEHRA--RLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEID---GNRISVNGNAADDGGG
        MNANQ+ V+DFLR SME EH+A  R+PKPPTRLQKQAPASLHLDQ+SS SM+ G  +T SKAILPLLSPLPLSPQP PE +    NR+S     A DGGG
Subjt:  MNANQTVVVDFLRGSMENEHRA--RLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEID---GNRISVNGNAADDGGG

Query:  NVDQRG
          DQRG
Subjt:  NVDQRG

A0A6P3ZH11 uncharacterized protein LOC1074110181.4e-1653.98Show/hide
Query:  KPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPG-GWQHPAVAATFADPST
        KPPTRLQK+APASL LDQ+ +++ +    +T SKAI PLLSPL LSPQPLPE+   R       A D     D+R      P  GWQHPAV  TF DPS+
Subjt:  KPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPG-GWQHPAVAATFADPST

Query:  LFTFFQSQCIVTS
        LF FFQSQC++ +
Subjt:  LFTFFQSQCIVTS

A0A7J7DE91 Uncharacterized protein2.1e-1544Show/hide
Query:  FLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPGGW
        F R  +E++++AR+ KPPTRLQK+APASL LDQ+++   S       +   +PLLSPL +SP PL E +      N    D G    +  G      GGW
Subjt:  FLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPGGW

Query:  QHPAVAATFADPSTLFTFFQSQCIV
        QHPAV A + +PS +F FFQSQC++
Subjt:  QHPAVAATFADPSTLFTFFQSQCIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G07473.1 unknown protein7.2e-0544.44Show/hide
Query:  RARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQP
        ++  P+ PTRLQKQAP +LHL  +        S+D      +PLLSPL +SP P
Subjt:  RARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCAAATCAGACTGTCGTCGTTGATTTTCTCAGAGGATCAATGGAGAACGAACACAGAGCCAGATTACCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGC
AAGTCTTCATCTCGATCAACTTTCAAGCGCCTCAATGTCTTCTGGCAGTACCGACACTCGTTCGAAGGCGATCCTTCCTCTCCTATCGCCACTCCCTTTATCGCCACAGC
CGTTGCCTGAAATTGACGGAAATAGAATATCCGTGAACGGAAATGCCGCAGACGACGGCGGCGGTAATGTCGATCAAAGAGGTATAGGTTTTGCAGCTCCTGGTGGCTGG
CAACACCCAGCAGTGGCGGCGACATTCGCCGATCCTTCCACACTGTTTACTTTCTTTCAATCGCAATGCATCGTGACCAGTAACACACCGTAA
mRNA sequenceShow/hide mRNA sequence
TATGAAATGAAATTTGGTTTCAAGATTTCTGACCATTAACCTTCATAACCAACGATCTCCTTTTCCGCTTCCCAAGCACAAATTCCTGTTTACTTTCATCCCTTCCTTCT
GCTTTCATTTTTCCCTATATTTCTACTCCAATGAATGCAAATCAGACTGTCGTCGTTGATTTTCTCAGAGGATCAATGGAGAACGAACACAGAGCCAGATTACCTAAACC
TCCGACCAGGTTACAGAAGCAGGCGCCGGCAAGTCTTCATCTCGATCAACTTTCAAGCGCCTCAATGTCTTCTGGCAGTACCGACACTCGTTCGAAGGCGATCCTTCCTC
TCCTATCGCCACTCCCTTTATCGCCACAGCCGTTGCCTGAAATTGACGGAAATAGAATATCCGTGAACGGAAATGCCGCAGACGACGGCGGCGGTAATGTCGATCAAAGA
GGTATAGGTTTTGCAGCTCCTGGTGGCTGGCAACACCCAGCAGTGGCGGCGACATTCGCCGATCCTTCCACACTGTTTACTTTCTTTCAATCGCAATGCATCGTGACCAG
TAACACACCGTAAGAAGATGAAGATTGTGGATCGAGTCTCGCGTTTGATGCTCTACATAAATCCATTCCATGTACAGTATTTGTGTGTGTGTGTGTTCGTCGCCACTTCC
ATTAAAGTCTCCATGAATGCTTCTTCTGGTGTTGTGCCTTTGATGATTTTTAACGCGGGAAACCTCTCTCTCTCTCTCTCTCTTTGTCGCTCTCACTTCCTACTCATAAT
CTAACACCCCGCTCGTTTTCAAATTCTTTCTATTCAATTCATTTGTTGTAATGTGTTCCTCTACGTTCAAGTCTCAATCATGAATCTCATATTTCGCCATTAAAATTTAT
GCTCAACATCCTCAAATCAGATCTGATAATAAGACACTCCCAATGAATTTACATAAGATGACAACAACAAGACTCGTGACTTGAAGGAGATAGAAATTAAAAACCAATGG
AAAGCCAAGAAAATGTCT
Protein sequenceShow/hide protein sequence
MNANQTVVVDFLRGSMENEHRARLPKPPTRLQKQAPASLHLDQLSSASMSSGSTDTRSKAILPLLSPLPLSPQPLPEIDGNRISVNGNAADDGGGNVDQRGIGFAAPGGW
QHPAVAATFADPSTLFTFFQSQCIVTSNTP