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Clc02G21535 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G21535
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA polymerase epsilon subunit 3
Genome locationClcChr02:33754020..33756505
RNA-Seq ExpressionClc02G21535
SyntenyClc02G21535
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0005694 - chromosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK43746.1 unknown [Lotus japonicus]5.4e-1849.52Show/hide
Query:  RVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGV
        R+      LT ++I+ PSL  + I+HIHGS+ LPPS+LSV NSITNHIL++DL+NT+   IDQ+TDTLH T  SQT N  L ++L+VV+++L +  G  +
Subjt:  RVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGV

Query:  REQST
         +  T
Subjt:  REQST

KAF1894647.1 hypothetical protein Lal_00027024 [Lupinus albus]3.2e-1857.65Show/hide
Query:  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNL
        NLT++TI+ PSL  + IN+IH S+RLPPS+ S+ N ITNHIL+ED +NTS  FI+Q+TD+ HT+S+ Q+ N R  ++LNVV+QNL
Subjt:  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNL

KAF3586617.1 hypothetical protein F2Q69_00026051 [Brassica cretica]4.1e-1840.28Show/hide
Query:  GFNLRVGAQRKKKKKKKKKEWNKRVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTA
        G  L +  + KKK      + ++ +  ++ +LT+ET++S SLP Q INHIH S+ LPP VLSV +S+T+ ILE+DL+++SG  +DQ+ +TL  TS S+T 
Subjt:  GFNLRVGAQRKKKKKKKKKEWNKRVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTA

Query:  NGRLGNTLNVVSQNLPILVGFGVREQSTLSVGFYIHRRFTRAIR
        NGRLG+TL+V+ ++LP+ +G  + +  +     Y   R+   +R
Subjt:  NGRLGNTLNVVSQNLPILVGFGVREQSTLSVGFYIHRRFTRAIR

KAF3854462.1 hypothetical protein F7725_022517 [Dissostichus mawsoni]4.1e-1844.92Show/hide
Query:  HNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQ-ST
        H LTSE +QS +LP QGI+HIHG H L   VL V + IT+HIL+EDLQ+ +G  +DQ+ DTLH+ + SQTAN   G++L+V+++N  + +G    E  S+
Subjt:  HNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQ-ST

Query:  LSVGFYIHRRFTRAIRVK
         S   +    F R + +K
Subjt:  LSVGFYIHRRFTRAIRVK

KAG6540107.1 hypothetical protein Mapa_018562 [Marchantia paleacea]1.2e-1750Show/hide
Query:  VARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVG
        +A   H L+SE++QS SL  QG++HIH S  L P VL V + I++H+L++DLQN++  FI+Q  DTLH++S+SQT +G L N LNV+S++LP+ +G
Subjt:  VARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVG

TrEMBL top hitse value%identityAlignment
A0A1J3E1Q1 Uncharacterized protein (Fragment)1.7e-1757.65Show/hide
Query:  TSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPI
        T+E+I+S +L  Q I++IH SHRLPP VLSV +S+++ ILE+DLQN+S FF+DQ+ D+LH +STS++ N RL ++L+VVSQNLP+
Subjt:  TSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPI

A0A6A5PAG4 Uncharacterized protein1.5e-1857.65Show/hide
Query:  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNL
        NLT++TI+ PSL  + IN+IH S+RLPPS+ S+ N ITNHIL+ED +NTS  FI+Q+TD+ HT+S+ Q+ N R  ++LNVV+QNL
Subjt:  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNL

A0A7J5YY10 Uncharacterized protein2.0e-1844.92Show/hide
Query:  HNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQ-ST
        H LTSE +QS +LP QGI+HIHG H L   VL V + IT+HIL+EDLQ+ +G  +DQ+ DTLH+ + SQTAN   G++L+V+++N  + +G    E  S+
Subjt:  HNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQ-ST

Query:  LSVGFYIHRRFTRAIRVK
         S   +    F R + +K
Subjt:  LSVGFYIHRRFTRAIRVK

I3SU04 Uncharacterized protein2.6e-1849.52Show/hide
Query:  RVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGV
        R+      LT ++I+ PSL  + I+HIHGS+ LPPS+LSV NSITNHIL++DL+NT+   IDQ+TDTLH T  SQT N  L ++L+VV+++L +  G  +
Subjt:  RVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGV

Query:  REQST
         +  T
Subjt:  REQST

V9IKG5 Uncharacterized protein9.9e-1854.44Show/hide
Query:  ARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNL
        A + H LT++T++  SL  Q +N+IHGS+ LP  +LSV +SI+++I +E LQ TS FF+DQS +TLHTT+TS+T NG  GNTL+V++QNL
Subjt:  ARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGATTCAATTTACG
AGTGGGCGCGCAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAAGACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCC
TGCCTTTTCAAGGCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTGTACGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAAC
ACCTCTGGTTTCTTCATAGATCAATCCACTGATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTGGTAATACCCTGAATGTTGTCTCTCAGAACCT
TCCGATTCTAGTCGGCTTTGGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATTGAGG
TTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGATTCAATTTACG
AGTGGGCGCGCAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAAGACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCC
TGCCTTTTCAAGGCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTGTACGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAAC
ACCTCTGGTTTCTTCATAGATCAATCCACTGATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTGGTAATACCCTGAATGTTGTCTCTCAGAACCT
TCCGATTCTAGTCGGCTTTGGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATTGAGG
TTTGA
Protein sequenceShow/hide protein sequence
MHRSKHVLKRSKENIVRGPKDKFVHEGRKHRYGFNLRVGAQRKKKKKKKKKEWNKRVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQN
TSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQSTLSVGFYIHRRFTRAIRVKPFRIEV