; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G21550 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G21550
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionhistone H4
Genome locationClcChr02:33759781..33763262
RNA-Seq ExpressionClc02G21550
SyntenyClc02G21550
Gene Ontology termsGO:0006352 - DNA-templated transcription, initiation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005654 - nucleoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR001951 - Histone H4
IPR009072 - Histone-fold
IPR019809 - Histone H4, conserved site
IPR035425 - CENP-T/Histone H4, histone fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KQK05861.2 hypothetical protein BRADI_2g22991v3 [Brachypodium distachyon]8.7e-5098.18Show/hide
Query:  SSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR
        SS S AAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR
Subjt:  SSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR

Query:  QGRTLYGFGG
        QGRTLYGFGG
Subjt:  QGRTLYGFGG

RCV07805.1 hypothetical protein SETIT_1G275000v2, partial [Setaria italica]5.1e-5082.52Show/hide
Query:  IGTSINKPDR---HNSNIEIKTHNRLFYIAVHSSKSPA-AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
        I  + N P R   H    E  T + L   A  SS SPA AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Subjt:  IGTSINKPDR---HNSNIEIKTHNRLFYIAVHSSKSPA-AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK

Query:  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
        IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

XP_024311841.1 uncharacterized protein LOC100841093 [Brachypodium distachyon]8.7e-5092.11Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGTSRREMKMICS
        FGGT+++ + ++ S
Subjt:  FGGTSRREMKMICS

XP_030382654.1 uncharacterized protein LOC115630260 [Scaptodrosophila lebanonensis]1.5e-4971.6Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGTSRREMKMICSSFMCLSKLYEEI--RAGRLA-------LTTHEFQNWIYILFSLDFSFH
        FGG S + M  I +SF  ++ ++E I   A RLA       +T+ E Q  + +L   + + H
Subjt:  FGGTSRREMKMICSSFMCLSKLYEEI--RAGRLA-------LTTHEFQNWIYILFSLDFSFH

XP_039623717.1 uncharacterized protein zgc:163040 [Polypterus senegalus]6.7e-5084.92Show/hide
Query:  NIEIKTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA
        N+E+  + RL  +A  S++    MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA
Subjt:  NIEIKTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA

Query:  RRKTVTAMDVVYALKRQGRTLYGFGG
        +RKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  RRKTVTAMDVVYALKRQGRTLYGFGG

TrEMBL top hitse value%identityAlignment
A0A287J3E0 Histone H43.8e-5191.67Show/hide
Query:  LFYIAVHS---SKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVT
        LF++  HS    +S AAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVT
Subjt:  LFYIAVHS---SKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVT

Query:  AMDVVYALKRQGRTLYGFGG
        AMDVVYALKRQGRTLYGFGG
Subjt:  AMDVVYALKRQGRTLYGFGG

A0A368PPX9 Histone H4 (Fragment)2.5e-5082.52Show/hide
Query:  IGTSINKPDR---HNSNIEIKTHNRLFYIAVHSSKSPA-AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
        I  + N P R   H    E  T + L   A  SS SPA AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Subjt:  IGTSINKPDR---HNSNIEIKTHNRLFYIAVHSSKSPA-AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK

Query:  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
        IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

A0A453CPZ9 Histone H42.5e-5079.43Show/hide
Query:  INKPDRHNSNI------EIKTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF
        IN+P    S I       +++  +L +  +  S+  AAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF
Subjt:  INKPDRHNSNI------EIKTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF

Query:  LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
        LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

A0A453CQ14 Histone H42.5e-5079.43Show/hide
Query:  INKPDRHNSNI------EIKTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF
        IN+P    S I       +++  +L +  +  S+  AAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF
Subjt:  INKPDRHNSNI------EIKTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF

Query:  LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
        LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

A0A453MZX7 Histone H46.5e-5188.52Show/hide
Query:  KTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
        + H+R   I++  S  P+AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Subjt:  KTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT

Query:  VTAMDVVYALKRQGRTLYGFGG
        VTAMDVVYALKRQGR LYGFGG
Subjt:  VTAMDVVYALKRQGRTLYGFGG

SwissProt top hitse value%identityAlignment
P59259 Histone H41.4e-50100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

P62785 Histone H4 variant TH0111.4e-50100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6LAF3 Histone H41.4e-50100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6PMI5 Histone H41.4e-50100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6WZ83 Histone H41.4e-50100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Arabidopsis top hitse value%identityAlignment
AT1G07660.1 Histone superfamily protein9.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT1G07820.1 Histone superfamily protein9.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT1G07820.2 Histone superfamily protein9.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT2G28740.1 histone H49.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT3G45930.1 Histone superfamily protein9.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTACTAATACACTCAGAACTCACGCGGATCGAGCTTTTGAACCGTCGATCTTTCAAAGATCCAACGGAGAACAGAATTCTCAGCTAAACTCCAAAACCAGGCTTCG
AATTGGCACTTCCATAAATAAGCCGGATCGGCACAATTCTAACATCGAAATCAAAACTCACAATCGATTATTCTACATCGCTGTTCATTCCTCAAAATCACCGGCGGCAA
TGTCTGGTCGTGGAAAGGGTGGCAAGGGACTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGT
TTGGCTCGTAGAGGTGGTGTGAAGCGTATCAGTGGGTTGATCTACGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTCGAGAATGTGATTCGTGATGCTGTTACCTACAC
TGAGCATGCAAGGAGGAAGACGGTGACTGCCATGGATGTGGTCTATGCCTTGAAAAGGCAAGGGAGGACTTTGTACGGTTTCGGAGGAACCTCGAGGAGGGAAATGAAAA
TGATTTGCAGTTCGTTTATGTGCTTGAGCAAATTGTACGAGGAAATCAGAGCTGGAAGATTGGCTTTAACAACGCATGAATTTCAGAACTGGATCTATATTCTCTTTTCC
CTTGACTTCTCGTTCCATCCAGAACGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTACTAATACACTCAGAACTCACGCGGATCGAGCTTTTGAACCGTCGATCTTTCAAAGATCCAACGGAGAACAGAATTCTCAGCTAAACTCCAAAACCAGGCTTCG
AATTGGCACTTCCATAAATAAGCCGGATCGGCACAATTCTAACATCGAAATCAAAACTCACAATCGATTATTCTACATCGCTGTTCATTCCTCAAAATCACCGGCGGCAA
TGTCTGGTCGTGGAAAGGGTGGCAAGGGACTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGT
TTGGCTCGTAGAGGTGGTGTGAAGCGTATCAGTGGGTTGATCTACGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTCGAGAATGTGATTCGTGATGCTGTTACCTACAC
TGAGCATGCAAGGAGGAAGACGGTGACTGCCATGGATGTGGTCTATGCCTTGAAAAGGCAAGGGAGGACTTTGTACGGTTTCGGAGGAACCTCGAGGAGGGAAATGAAAA
TGATTTGCAGTTCGTTTATGTGCTTGAGCAAATTGTACGAGGAAATCAGAGCTGGAAGATTGGCTTTAACAACGCATGAATTTCAGAACTGGATCTATATTCTCTTTTCC
CTTGACTTCTCGTTCCATCCAGAACGGTGA
Protein sequenceShow/hide protein sequence
MVTNTLRTHADRAFEPSIFQRSNGEQNSQLNSKTRLRIGTSINKPDRHNSNIEIKTHNRLFYIAVHSSKSPAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRR
LARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGTSRREMKMICSSFMCLSKLYEEIRAGRLALTTHEFQNWIYILFS
LDFSFHPER