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Clc02G21580 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G21580
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHistone H2B
Genome locationClcChr02:33777260..33780119
RNA-Seq ExpressionClc02G21580
SyntenyClc02G21580
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RZC56488.1 hypothetical protein C5167_015344 [Papaver somniferum]2.4e-3562.99Show/hide
Query:  KKPAEKKPASDKPAE----ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
        KKPAEKKPA +K AE    E+KP               ++K R ++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKK
Subjt:  KKPAEKKPASDKPAE----ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK

Query:  PTITSREIQTAVRLVLPGELAKHAVSEGTKAVNEIEQEIRMLKRSVNASFYVPL
        PTITSREIQTAVRLVLPGELAKHAVSEGTKAV + + +I +LK    A F+V +
Subjt:  PTITSREIQTAVRLVLPGELAKHAVSEGTKAVNEIEQEIRMLKRSVNASFYVPL

XP_008448382.1 PREDICTED: histone H2B [Cucumis melo]5.4e-3566.9Show/hide
Query:  KKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS
        KKPAEKKPASDKPAEE+K +                          ++K R ++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS
Subjt:  KKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS

Query:  KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

XP_016575882.1 PREDICTED: histone H2B.7-like [Capsicum annuum]9.1e-3566.42Show/hide
Query:  KKPAEKKPASDKPAEERKPLQRKLRRRRSLRP----------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY
        KKPAEK PAS+KP++E+ P ++K +  + L P                            VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY
Subjt:  KKPAEKKPASDKPAEERKPLQRKLRRRRSLRP----------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY

Query:  NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

XP_023533056.1 histone H1-II-like [Cucurbita pepo subsp. pepo]3.7e-3661.11Show/hide
Query:  PQFSTAFFHPSKFRWHQRPIKKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKA
        PQ STAF    +     +  KKPAEKKPA++KPAEE+K +                          ++K R ++S+         VLKQVHPDIGISSKA
Subjt:  PQFSTAFFHPSKFRWHQRPIKKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKA

Query:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  MGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

XP_038900415.1 histone H2B [Benincasa hispida]5.4e-3566.9Show/hide
Query:  KKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS
        KKPAEKKPASDKPAEE+K +                          ++K R ++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS
Subjt:  KKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS

Query:  KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

TrEMBL top hitse value%identityAlignment
A0A1S3BIZ0 Histone H2B2.6e-3566.9Show/hide
Query:  KKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS
        KKPAEKKPASDKPAEE+K +                          ++K R ++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS
Subjt:  KKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS

Query:  KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

A0A1U8GXA4 Histone H2B4.4e-3566.42Show/hide
Query:  KKPAEKKPASDKPAEERKPLQRKLRRRRSLRP----------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY
        KKPAEK PAS+KP++E+ P ++K +  + L P                            VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY
Subjt:  KKPAEKKPASDKPAEERKPLQRKLRRRRSLRP----------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY

Query:  NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

A0A2G2Z7S3 Histone H2B4.4e-3566.42Show/hide
Query:  KKPAEKKPASDKPAEERKPLQRKLRRRRSLRP----------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY
        KKPAEK PAS+KP++E+ P ++K +  + L P                            VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY
Subjt:  KKPAEKKPASDKPAEERKPLQRKLRRRRSLRP----------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARY

Query:  NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

A0A4Y7J9N6 Histone H2B1.2e-3562.99Show/hide
Query:  KKPAEKKPASDKPAE----ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
        KKPAEKKPA +K AE    E+KP               ++K R ++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKK
Subjt:  KKPAEKKPASDKPAE----ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK

Query:  PTITSREIQTAVRLVLPGELAKHAVSEGTKAVNEIEQEIRMLKRSVNASFYVPL
        PTITSREIQTAVRLVLPGELAKHAVSEGTKAV + + +I +LK    A F+V +
Subjt:  PTITSREIQTAVRLVLPGELAKHAVSEGTKAVNEIEQEIRMLKRSVNASFYVPL

A0A5D3DK48 Histone H2B2.6e-3566.9Show/hide
Query:  KKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS
        KKPAEKKPASDKPAEE+K +                          ++K R ++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS
Subjt:  KKPAEKKPASDKPAEERKPL--------------------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS

Query:  KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  KLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

SwissProt top hitse value%identityAlignment
O49118 Histone H2B1.5e-3566.92Show/hide
Query:  KKPAEKKPASDKPAEE-----------------RKPLQRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKP
        KKPAEKKP  +K AEE                  +P ++K R ++S+         VLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LARYNKKP
Subjt:  KKPAEKKPASDKPAEE-----------------RKPLQRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKP

Query:  TITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        TITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  TITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

P40283 Histone H2B.118.6e-3665.71Show/hide
Query:  KKPAEKKPASDKPAE----------ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKL
        KKPAEKKPAS+KP E          E+KP               ++K  +++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKL
Subjt:  KKPAEKKPASDKPAE----------ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKL

Query:  ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

Q1SU99 Probable histone H2B.32.3e-3668.5Show/hide
Query:  KKPAEKKPASDKPAEERKPLQRKLRRRRS------------------LRPVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE
        KKPAEKKPA   PAE++   ++K+ +  S                  +  VLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSRE
Subjt:  KKPAEKKPASDKPAEERKPLQRKLRRRRS------------------LRPVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE

Query:  IQTAVRLVLPGELAKHAVSEGTKAVNE
        IQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  IQTAVRLVLPGELAKHAVSEGTKAVNE

Q9LQQ4 Histone H2B.15.0e-3665.25Show/hide
Query:  RPIKKPAEKKPASDKPAEERK-----PLQRKLRRRRSLRP------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK
        R  KKPAEKK A+++P EE K     P ++K +  + L P                        VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK
Subjt:  RPIKKPAEKKPASDKPAEERK-----PLQRKLRRRRSLRP------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK

Query:  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

Q9ZUS0 Histone H2B.41.5e-3567.97Show/hide
Query:  KKPAEKKPASDKPAEERKPLQRKL---------RRRRSLR----------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
        KKPAEKKPA   PAE+    ++K+         ++++S +           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Subjt:  KKPAEKKPASDKPAEERKPLQRKL---------RRRRSLR----------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR

Query:  EIQTAVRLVLPGELAKHAVSEGTKAVNE
        EIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  EIQTAVRLVLPGELAKHAVSEGTKAVNE

Arabidopsis top hitse value%identityAlignment
AT1G07790.1 Histone superfamily protein3.6e-3765.25Show/hide
Query:  RPIKKPAEKKPASDKPAEERK-----PLQRKLRRRRSLRP------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK
        R  KKPAEKK A+++P EE K     P ++K +  + L P                        VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK
Subjt:  RPIKKPAEKKPASDKPAEERK-----PLQRKLRRRRSLRP------------------------VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK

Query:  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

AT2G28720.1 Histone superfamily protein4.0e-3664.54Show/hide
Query:  KKPAEKKPASDKPAEERK-----PLQRKLRRRRSLR---------------------------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK
        KKPAEKKPA   PAEE K     P ++K +  + L                             VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SK
Subjt:  KKPAEKKPASDKPAEERK-----PLQRKLRRRRSLR---------------------------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK

Query:  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

AT2G37470.1 Histone superfamily protein1.0e-3667.97Show/hide
Query:  KKPAEKKPASDKPAEERKPLQRKL---------RRRRSLR----------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
        KKPAEKKPA   PAE+    ++K+         ++++S +           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Subjt:  KKPAEKKPASDKPAEERKPLQRKL---------RRRRSLR----------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR

Query:  EIQTAVRLVLPGELAKHAVSEGTKAVNE
        EIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  EIQTAVRLVLPGELAKHAVSEGTKAVNE

AT3G45980.1 Histone superfamily protein2.3e-3664.34Show/hide
Query:  RPIKKPAEKKPASDKPAE----------ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQES
        R  KKPAEKKPA++KP E          E+KP               ++K  +++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLA ES
Subjt:  RPIKKPAEKKPASDKPAE----------ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQES

Query:  SKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        SKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  SKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE

AT5G59910.1 Histone superfamily protein6.1e-3765.71Show/hide
Query:  KKPAEKKPASDKPAE----------ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKL
        KKPAEKKPAS+KP E          E+KP               ++K  +++S+         VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKL
Subjt:  KKPAEKKPASDKPAE----------ERKPL--------------QRKLRRRRSLR-------PVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKL

Query:  ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE
        ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV +
Subjt:  ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAAAGAAATAGATAAAATTACGGGGCAAACATACTTTATAGGGGAAGAAGTGACTTACCTTGAAGCCTTTCTTCAACGTAATTTGTCTCCACAGCACGAACT
CCATAAACAGTCGCGAACAAAAACTAAGACACCACCACCGGCTCTTCCTTCTTCTTTTTTTGGAAGAGGTCAGCCATCTGTGGCTTCAGCCATCAGCGAATTAGAACTGA
TCGAGTGCAGATATAAATATACTAGTCCAAACGGCTTCCTTCAGAGCATTATTCCTTCTTCTGCTGTTAAACGAATCAAATTCGATCCTCAATTTTCCACCGCCTTCTTT
CATCCAAGCAAATTCCGATGGCACCAAAGGCCGATAAAGAAGCCCGCTGAGAAGAAACCGGCCTCCGACAAGCCGGCTGAGGAAAGAAAACCGTTGCAGAGAAAGCTCCG
GCGGAGAAGAAGCCTAAGGCCGGTGTTGAAGCAAGTTCATCCAGACATCGGTATTTCCAGCAAGGCCATGGGTATCATGAACAGCTTCATCAACGACATCTTCGAGAAAC
TCGCTCAAGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCTACCATCACTTCTAGGGAGATCCAAACGGCCGTCAGACTTGTTCTTCCCGGTGAGTTGGCCAAGCAC
GCTGTCTCTGAAGGAACCAAAGCGGTGAATGAAATTGAACAAGAAATTAGGATGCTTAAGAGATCTGTAAATGCTTCTTTTTATGTGCCGTTAATGGAAGTGATTTTGTT
CATCAACGATTCTTGTTTGCTGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAAAGAAATAGATAAAATTACGGGGCAAACATACTTTATAGGGGAAGAAGTGACTTACCTTGAAGCCTTTCTTCAACGTAATTTGTCTCCACAGCACGAACT
CCATAAACAGTCGCGAACAAAAACTAAGACACCACCACCGGCTCTTCCTTCTTCTTTTTTTGGAAGAGGTCAGCCATCTGTGGCTTCAGCCATCAGCGAATTAGAACTGA
TCGAGTGCAGATATAAATATACTAGTCCAAACGGCTTCCTTCAGAGCATTATTCCTTCTTCTGCTGTTAAACGAATCAAATTCGATCCTCAATTTTCCACCGCCTTCTTT
CATCCAAGCAAATTCCGATGGCACCAAAGGCCGATAAAGAAGCCCGCTGAGAAGAAACCGGCCTCCGACAAGCCGGCTGAGGAAAGAAAACCGTTGCAGAGAAAGCTCCG
GCGGAGAAGAAGCCTAAGGCCGGTGTTGAAGCAAGTTCATCCAGACATCGGTATTTCCAGCAAGGCCATGGGTATCATGAACAGCTTCATCAACGACATCTTCGAGAAAC
TCGCTCAAGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCTACCATCACTTCTAGGGAGATCCAAACGGCCGTCAGACTTGTTCTTCCCGGTGAGTTGGCCAAGCAC
GCTGTCTCTGAAGGAACCAAAGCGGTGAATGAAATTGAACAAGAAATTAGGATGCTTAAGAGATCTGTAAATGCTTCTTTTTATGTGCCGTTAATGGAAGTGATTTTGTT
CATCAACGATTCTTGTTTGCTGAAGTAA
Protein sequenceShow/hide protein sequence
MENKEIDKITGQTYFIGEEVTYLEAFLQRNLSPQHELHKQSRTKTKTPPPALPSSFFGRGQPSVASAISELELIECRYKYTSPNGFLQSIIPSSAVKRIKFDPQFSTAFF
HPSKFRWHQRPIKKPAEKKPASDKPAEERKPLQRKLRRRRSLRPVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKH
AVSEGTKAVNEIEQEIRMLKRSVNASFYVPLMEVILFINDSCLLK