; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G22280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G22280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationClcChr02:34415539..34416895
RNA-Seq ExpressionClc02G22280
SyntenyClc02G22280
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149541.1 protein transport protein Sec61 subunit beta [Cucumis sativus]1.0e-4090.83Show/hide
Query:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ASTGLV GGSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

XP_008463929.1 PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo]1.3e-4090.83Show/hide
Query:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA ASTGLV GGSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

XP_022140347.1 protein transport protein Sec61 subunit beta [Momordica charantia]8.5e-4088.79Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRR+ ST +A S G+V  GSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARS AGV
Subjt:  ARSAAGV

XP_022958107.1 protein transport protein Sec61 subunit beta [Cucurbita moschata]2.5e-4496.26Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS A +TGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARSAAGV
Subjt:  ARSAAGV

XP_038902812.1 protein transport protein Sec61 subunit beta [Benincasa hispida]3.7e-4395.33Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR
        MARG SQSQS SSSTSRPGVVAPRGSAAATAGLRRRR GSTSAAASTGLV GGSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARSAAGV
Subjt:  ARSAAGV

TrEMBL top hitse value%identityAlignment
A0A0A0KHR1 Protein transport protein Sec61 subunit beta4.9e-4190.83Show/hide
Query:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ASTGLV GGSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

A0A1S3CKE5 Protein transport protein Sec61 subunit beta6.3e-4190.83Show/hide
Query:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA ASTGLV GGSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

A0A5D3CTD4 Protein transport protein Sec61 subunit beta6.3e-4190.83Show/hide
Query:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA ASTGLV GGSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

A0A6J1H102 Protein transport protein Sec61 subunit beta1.2e-4496.26Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS A +TGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARSAAGV
Subjt:  ARSAAGV

A0A6J1JZ65 Protein transport protein Sec61 subunit beta1.2e-4496.26Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS A +TGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARSAAGV
Subjt:  ARSAAGV

SwissProt top hitse value%identityAlignment
P38389 Protein transport protein Sec61 subunit beta4.4e-1561.54Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY

P60467 Protein transport protein Sec61 subunit beta3.7e-0639.58Show/hide
Query:  SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA
        S +   SS  S    VA R + +     +    G+ SA  +T      S+G G M RFYT+D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Subjt:  SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA

P60468 Protein transport protein Sec61 subunit beta3.7e-0639.58Show/hide
Query:  SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA
        S +   SS  S    VA R + +     +    G+ SA  +T      S+G G M RFYT+D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Subjt:  SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA

Q5RB31 Protein transport protein Sec61 subunit beta3.7e-0639.58Show/hide
Query:  SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA
        S +   SS  S    VA R + +     +    G+ SA  +T      S+G G M RFYT+D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Subjt:  SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA

Q9CQS8 Protein transport protein Sec61 subunit beta3.7e-0639.58Show/hide
Query:  SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA
        S +   SS  S    VA R + +     +    G+ SA  +T      S+G G M RFYT+D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Subjt:  SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein3.1e-1661.54Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein3.1e-1661.54Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein3.1e-1661.54Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein3.1e-1661.54Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++S+ FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLY

AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein7.7e-3170.37Show/hide
Query:  MARGTSQSQ---SASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGK
        MARG+SQSQ   S  SST+RPG+ APRGSAAATAG+RRRR+G      S+G  SG  SG  NMLRFYTDDAPGLKISPTVVL++SLCFIGFVT LHVFGK
Subjt:  MARGTSQSQ---SASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGK

Query:  LYRARSAA
        LY  +S +
Subjt:  LYRARSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGAGGCACTTCTCAATCCCAATCCGCATCCTCCTCTACTTCCAGACCTGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACTGCTGGCCTCCGCCGCCGCCG
TATCGGCTCCACTTCTGCCGCTGCCTCTACTGGACTCGTAAGCGGCGGATCAAGCGGCGGCGGAAACATGCTCAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTT
CTCCCACCGTTGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATTTGCCACCTATTTTTATTGAAAATTATTCCTATAAAAGAAATTAAAAAATTAGTATGACAAAGCTACCTTCAATTTACCAAAGTAGCCCCATTGTAAGCTACCTTCAA
TTTACCGTTTCATATTCACAATTATTCACTGTTCAATAGTCTTTGAAGCTTCTGGTTCTTCTTCATTTGTCTTTCTTATTTTCCACCGCTCTAATTTCTCTCTCAAATTC
ACATATTTCCGATCTTCTTCTCCGATTCTCAAATCTATGGCCAGAGGCACTTCTCAATCCCAATCCGCATCCTCCTCTACTTCCAGACCTGGCGTCGTCGCTCCTCGCGG
CTCCGCGGCGGCGACTGCTGGCCTCCGCCGCCGCCGTATCGGCTCCACTTCTGCCGCTGCCTCTACTGGACTCGTAAGCGGCGGATCAAGCGGCGGCGGAAACATGCTCA
GATTCTACACTGACGATGCTCCAGGCTTGAAGATTTCTCCCACCGTTGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTC
TATCGCGCGCGATCCGCCGCTGGAGTTTAATCCTATGTCCATTTCGTATAAAGTGCCTTTTCCCTTCCCGATCTTTCATTCCCTAGATGAAATGTTCCAGTTTCTACTGA
CCTGATGATATAACGCTTTGTTTTTGGCTTTTGCTCTGTAAATTTCTCAATGGTTGTAGTCTCTTGAGGTTTCAATTCCATCAGTTGTGCACGTATCAAAAGGAACGAGA
TCGTTCTTTTGTTGATATTTTCTTGTTAGGTTAATCTAGTTCGTATGAGATATGCGGATTGCAGAGTATCTTTTTTCCGTCTGTATATGGTGTTTGTTCTCGTCTCACTG
AAAATTGTGCTTATATATGCTATGAAATTAGCTGTTTCTTCTATGGATGAGTGAGTGGGGATTCTATATATGAGCTCTTCTTTATTAGCAATTGCGCATCAATTAGATTT
TGTACGTTTTCTGATGGGTACTCACACATTAGATTCGTTTATTAAAGTTGATGTTTGATTTTGTTTGGGAAGTGTTATTGACAATCTTTTTTCTATTTACAATTAAAGTT
TAGAAGATAGAATCAGACTCCATTACACAAAGCTTCTTTTGATTTTGATTTTATTTATTTATTATTTATTTTTATTTTTTGGTGGACCTTTTATCATTGCCTTTTTACAA
GTGAATGAAGTGGAAAGTGCCCACGAAGACATCTTTGTTAAGGAGGTAAAGTAGTTAGAGGATGGATAAATAGGCACCACTATGAACAAGTAAGATTATTGTGAGTTGAA
GATTAAGTAGTCTATGTTGAGTCCATTTTAGTCTTAG
Protein sequenceShow/hide protein sequence
MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV