; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G22730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G22730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L18
Genome locationClcChr02:34787644..34788030
RNA-Seq ExpressionClc02G22730
SyntenyClc02G22730
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06187.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]3.1e-5792.25Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNV-DDASRSSYQ
        AIVNSLKNNGVKLILDNNV DDA++S+YQ
Subjt:  AIVNSLKNNGVKLILDNNV-DDASRSSYQ

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]4.4e-5995.31Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDDASRSSYQ
        AIVNSLKNNGVKLILDNN DDASR SY+
Subjt:  AIVNSLKNNGVKLILDNNVDDASRSSYQ

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]2.2e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDDASRSSYQ
        AIVNSLKNNGVKLILDNN DDA R SY+
Subjt:  AIVNSLKNNGVKLILDNNVDDASRSSYQ

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]5.7e-5994.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDDASRSSYQ
        AIVNSLKNNGVKLILDNN DDASR SY+
Subjt:  AIVNSLKNNGVKLILDNNVDDASRSSYQ

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]1.4e-6096.88Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH D+NKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDDASRSSYQ
        AIVN+LKNNGVKLILDNNVDDASRSSYQ
Subjt:  AIVNSLKNNGVKLILDNNVDDASRSSYQ

TrEMBL top hitse value%identityAlignment
A0A1S4E442 uncharacterized protein LOC1035015015.8e-5791.47Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNV-DDASRSSYQ
        AIVNSLKNNGVKLIL+NNV DDA++S+YQ
Subjt:  AIVNSLKNNGVKLILDNNV-DDASRSSYQ

A0A5A7SM55 50S ribosomal protein L185.8e-5791.47Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNV-DDASRSSYQ
        AIVNSLKNNGVKLIL+NNV DDA++S+YQ
Subjt:  AIVNSLKNNGVKLILDNNV-DDASRSSYQ

A0A5D3C2Z2 50S ribosomal protein L181.5e-5792.25Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNV-DDASRSSYQ
        AIVNSLKNNGVKLILDNNV DDA++S+YQ
Subjt:  AIVNSLKNNGVKLILDNNV-DDASRSSYQ

A0A6J1FXG0 uncharacterized protein LOC1114484602.1e-5995.31Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDDASRSSYQ
        AIVNSLKNNGVKLILDNN DDASR SY+
Subjt:  AIVNSLKNNGVKLILDNNVDDASRSSYQ

A0A6J1JBQ5 uncharacterized protein LOC1114836101.1e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDDASRSSYQ
        AIVNSLKNNGVKLILDNN DDA R SY+
Subjt:  AIVNSLKNNGVKLILDNNVDDASRSSYQ

SwissProt top hitse value%identityAlignment
A1KRI9 50S ribosomal protein L181.4e-0429.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

A9M3V0 50S ribosomal protein L181.4e-0429.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q5F5U3 50S ribosomal protein L181.4e-0429.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q7DDT0 50S ribosomal protein L181.4e-0429.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q9JQQ6 50S ribosomal protein L181.4e-0429.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein1.5e-5280.99Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIH D+ KE+EKKGFK+RTK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDD
        A++NSL+NNGV LILD++ DD
Subjt:  AIVNSLKNNGVKLILDNNVDD

AT5G27820.1 Ribosomal L18p/L5e family protein4.3e-0425.23Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV
        LK YVL++  + K++ A V+      +  +AS+ E +++ +++  R  +  AA+ +G++L  RL +  +       + + + KE    G     K+ A++
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIV

Query:  NSLKNNGVKLI
        +S++  GVKL+
Subjt:  NSLKNNGVKLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGT
TGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAAC
AGGGGCAAGGCAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCACTCAAGAATAACGGA
GTTAAACTAATACTCGACAACAATGTAGATGATGCATCTCGGTCGAGTTATCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGT
TGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAAC
AGGGGCAAGGCAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCACTCAAGAATAACGGA
GTTAAACTAATACTCGACAACAATGTAGATGATGCATCTCGGTCGAGTTATCAATAA
Protein sequenceShow/hide protein sequence
MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNG
VKLILDNNVDDASRSSYQ