CuGenDBv2

Gene ID	Clc02G22780
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Rep_fac-A_C domain-containing protein
Genome location	ClcChr02:34829674..34832116
RNA-Seq Expression	Clc02G22780
Synteny	Clc02G22780
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold IPR013955 - Replication factor A, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

1.6e-78

74.76

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLRELYG                                +T +S AVG GQ
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ

Query:  NMEMVPKSKR
        NM    K KR
Subjt:  NMEMVPKSKR

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

1.6e-78

74.76

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLRELYG                                +T +S AVG GQ
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ

Query:  NMEMVPKSKR
        NM    K KR
Subjt:  NMEMVPKSKR

XP_022985581.1 uncharacterized protein LOC111483608 isoform X3 [Cucurbita maxima]

6.6e-77

73.81

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLRELYG                                +  +S AVG GQ
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ

Query:  NMEMVPKSKR
        NM    K KR
Subjt:  NMEMVPKSKR

XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]

1.0e-77

74.76

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNP SSSSKRVFRLLMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLRELYG                                +T +S AVG GQ
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ

Query:  NMEMVPKSKR
        NM    K KR
Subjt:  NMEMVPKSKR

XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]

2.1e-78

94.87

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+ DNPSSS+CKFCNFNAFNP  SSSKRVFRLLMSIATD+KVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYG
        HPFAAE VSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYG
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CHW5 uncharacterized protein LOC111011075

1.2e-76

91.67

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCY+VCSICER++ DNPSSSLCKFCNFNAFNPG SSSKR+FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYG
        HPFAAE  SEILEGEMFR+TISKPKNGNAQHSRVVQVVPLSSGFQPAI RLRELYG
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

7.6e-79

74.76

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLRELYG                                +T +S AVG GQ
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ

Query:  NMEMVPKSKR
        NM    K KR
Subjt:  NMEMVPKSKR

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

7.6e-79

74.76

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLRELYG                                +T +S AVG GQ
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ

Query:  NMEMVPKSKR
        NM    K KR
Subjt:  NMEMVPKSKR

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

3.2e-77

73.81

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLRELYG                                +  +S AVG GQ
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQ

Query:  NMEMVPKSKR
        NM    K KR
Subjt:  NMEMVPKSKR

A0A6J1JE09 uncharacterized protein LOC111483608 isoform X1

3.0e-75

71.76

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Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPF------AAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISF
        HPF      AAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLRELYG                                +  +S 
Subjt:  HPF------AAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISF

Query:  AVGKGQNMEMVPKSKR
        AVG GQNM    K KR
Subjt:  AVGKGQNMEMVPKSKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.3e-41

56.29

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Query:  TTMCAVIAMDHTSFCYKVCSICERTV-SDN---PSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF
        T +C ++A+D T +CY+VCS C+R + SDN    SSS CKFC        S   K ++R+LMSIATD  V+TVICFDRAA VLFGCSADEFF F KL+P 
Subjt:  TTMCAVIAMDHTSFCYKVCSICERTV-SDN---PSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF

Query:  AAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        AA  V+++ +GEM R+T+++P+N NAQH RV  VVPL SG QPAI  LR++
Subjt:  AAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

Sequences

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CDS sequence

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ATGGAAAATGATAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACCAGTTTCTGTTACAAAGTTTGTTCTATCTGTGAGAGAACAGTTTCTGATAACCC
ATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCTTCCTCCAAACGTGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTAC
AGACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTTTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAGCTGTAAGTGAA
ATTCTGGAAGGAGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACATTCAAGAGTTGTCCAAGTTGTTCCTCTAAGTTCAGGTTTTCAACCAGC
AATTTTTAGACTGAGGGAATTGTATGGGGTATCTTATGATTGCCCAGTGGCTCTATATATTTTCATTATTGAAATCTACTTGCAAATGGCTGCTAAATCTTGTTTACAGA
GTCAATTCCAATTGATAACTCTGATTTCATTTGCTGTTGGTAAGGGACAAAATATGGAAATGGTTCCTAAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCT
AAGCCTATCCCATTCCCGACATTGTTTGCATTTTTGCTATCATTTAGAATGTGA

mRNA sequence

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TTTTCCCTCCAAACAGTGTTGTGTATAGTGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAGGCATTCTCCTTCAGAGGAGTAATGGAAAATGATAAGCCAATA
ACAACCATGTGCGCAGTGATAGCTATGGATCACACCAGTTTCTGTTACAAAGTTTGTTCTATCTGTGAGAGAACAGTTTCTGATAACCCATCTTCTTCTCTTTGCAAATT
CTGCAACTTCAACGCCTTCAATCCCGGTTCCTCTTCCTCCAAACGTGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAGACTGTAATATGCTTTGATA
GGGCTGCTAGGGTTCTTTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAGCTGTAAGTGAAATTCTGGAAGGAGAGATGTTT
AGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACATTCAAGAGTTGTCCAAGTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTTTTAGACTGAGGGAATT
GTATGGGGTATCTTATGATTGCCCAGTGGCTCTATATATTTTCATTATTGAAATCTACTTGCAAATGGCTGCTAAATCTTGTTTACAGAGTCAATTCCAATTGATAACTC
TGATTTCATTTGCTGTTGGTAAGGGACAAAATATGGAAATGGTTCCTAAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAAGCCTATCCCATTCCCGACA
TTGTTTGCATTTTTGCTATCATTTAGAATGTGA

Protein sequence

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MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSE
ILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQNMEMVPKSKRDVMWAPQKLP
KPIPFPTLFAFLLSFRM

Clc02G22780 (gene) of Watermelon (cordophanus) v2 genome