CuGenDBv2

Gene ID	Clc02G22820
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA ligase
Genome location	ClcChr02:34866210..34868931
RNA-Seq Expression	Clc02G22820
Synteny	Clc02G22820
Gene Ontology terms	GO:0006266 - DNA ligation (biological process) GO:0006273 - lagging strand elongation (biological process) GO:0006281 - DNA repair (biological process) GO:0006310 - DNA recombination (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0005634 - nucleus (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003910 - DNA ligase (ATP) activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR012310 - DNA ligase, ATP-dependent, central IPR012340 - Nucleic acid-binding, OB-fold IPR016059 - DNA ligase, ATP-dependent, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570819.1 DNA ligase 1, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-42

79.66

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IPEPKSYYRYGDTINPDV
Subjt:  IPEPKSYYRYGDTINPDV

KAG7010661.1 DNA ligase 1 [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-42

79.66

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IPEPKSYYRYGDTINPDV
Subjt:  IPEPKSYYRYGDTINPDV

XP_022943872.1 DNA ligase 1 [Cucurbita moschata]

1.6e-42

79.66

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IPEPKSYYRYGDTINPDV
Subjt:  IPEPKSYYRYGDTINPDV

XP_022985559.1 DNA ligase 1 [Cucurbita maxima]

1.6e-42

79.66

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IPEPKSYYRYGDTINPDV
Subjt:  IPEPKSYYRYGDTINPDV

XP_023512549.1 DNA ligase 1 [Cucurbita pepo subsp. pepo]

1.6e-42

79.66

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IPEPKSYYRYGDTINPDV
Subjt:  IPEPKSYYRYGDTINPDV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGJ2 DNA ligase

2.0e-41

77.97

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRS NWLKLKKDYID+IGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IPEPKSYYRYGDTINPDV
Subjt:  IPEPKSYYRYGDTINPDV

A0A5D3DKM3 DNA ligase

1.7e-40

76.27

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRS NWLKLKKDYID+IGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IP+PKSYYRYGD INPDV
Subjt:  IPEPKSYYRYGDTINPDV

A0A6J1FU87 DNA ligase

8.0e-43

79.66

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IPEPKSYYRYGDTINPDV
Subjt:  IPEPKSYYRYGDTINPDV

A0A6J1JDM0 DNA ligase

8.0e-43

79.66

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Query:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV
        QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT                        GTGFSEAMLEERSASLRSKV
Subjt:  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDV
        IPEPKSYYRYGDTINPDV
Subjt:  IPEPKSYYRYGDTINPDV

A0A7J6FCU3 DNA ligase

7.4e-41

89.13

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Query:  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
        CEGLIIKT+N+DATYEPS+RSLNWLKLKKDY+D+IGDSLDLVPIAAFHGRGKRTGTGFSEAMLEERSASLRSKVI  PKSYYRY ++INPDV
Subjt:  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV

SwissProt top hits

e value

%identity

Alignment

P18858 DNA ligase 1

2.3e-23

41.96

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Query:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVI
        SCEGL++KTL+ DATYE +KRS NWLKLKKDY+D +GD+LDLV I A+ GRGKR                         GTGFS+  LEE   SL++ V+
Subjt:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVI

Query:  PEPKSYYRYGDTINPDVGLSLLRVVRVFIPPPFWYCACGEFKV
        P P+ Y R    + PD  L          P   W   C +  +
Subjt:  PEPKSYYRYGDTINPDVGLSLLRVVRVFIPPPFWYCACGEFKV

P37913 DNA ligase 1

2.3e-23

40.51

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Query:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVI
        SCEGL++KTL+ DATYE +KRS NWLKLKKDY+D +GD+LDLV I A+ GRGKR                         GTGFS+  LEE   SL++ V+
Subjt:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVI

Query:  PEPKSYYRYGDTINPDVGLSLLRVVRVFIPPPFWYCACGEFK---VFVAPSPSLQKEK
        P P+ Y R    + PD  L          P   W   C +     ++ A    + KEK
Subjt:  PEPKSYYRYGDTINPDVGLSLLRVVRVFIPPPFWYCACGEFK---VFVAPSPSLQKEK

P51892 DNA ligase 1

8.8e-23

40.56

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Query:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVI
        SCEGL++KTL +DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ G+GKRT                        GTGF++  LE+    L+  VI
Subjt:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVI

Query:  PEPKSYYRYGDTINPDVGLSLLRVVRVFIPPPFWYCACGEFKV
          P+SYYR+     PD           F P   W   C +  +
Subjt:  PEPKSYYRYGDTINPDVGLSLLRVVRVFIPPPFWYCACGEFKV

Q42572 DNA ligase 1

2.6e-35

64.66

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Query:  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVIP
        CEGLIIKTL+ DATYEP+KRS NWLKLKKDY+D+IGDS+DLVPIAAFHGRGKRT                        GTGFS+AML+ERS+SLRS+VI 
Subjt:  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVIP

Query:  EPKSYYRYGDTINPDV
         PK YYR GD++NPDV
Subjt:  EPKSYYRYGDTINPDV

Q869E1 DNA ligase 1

3.3e-22

42.5

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Query:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVI
        +CEGL++KTL   + YEPS+RS NWLK+KKDY+  + DSLDLVPI A++G+GKRT                        GTGFS+  L   ++ L+  +I
Subjt:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVI

Query:  PEPKSYYRYGDTINPDVGLS
         +P++ +R+ D+I PDV  S
Subjt:  PEPKSYYRYGDTINPDVGLS

Arabidopsis top hits

e value

%identity

Alignment

AT1G08130.1 DNA ligase 1

1.9e-36

64.66

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Query:  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVIP
        CEGLIIKTL+ DATYEP+KRS NWLKLKKDY+D+IGDS+DLVPIAAFHGRGKRT                        GTGFS+AML+ERS+SLRS+VI 
Subjt:  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVIP

Query:  EPKSYYRYGDTINPDV
         PK YYR GD++NPDV
Subjt:  EPKSYYRYGDTINPDV

AT1G49250.1 ATP-dependent DNA ligase

1.3e-29

53.17

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Query:  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVIP
        CEGL+IK+L  +ATYEP+KRS NWLKLKKDY+DNIGDS+DLVPIA FHGRGKRT                        GT FS+  L++ S+SL SKVI 
Subjt:  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------------------------GTGFSEAMLEERSASLRSKVIP

Query:  EPKSYYRYGDTINPDVGLSLLRVVRV
         PK YY+  + +NPDV L    V  V
Subjt:  EPKSYYRYGDTINPDVGLSLLRVVRV

AT1G66730.1 DNA LIGASE 6

1.9e-17

37.19

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Query:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTG------------------------TGFSEAM-LEERSASLRSKV
        SCEG+++K+L+ +A Y P+KRS +WLK+K+DY+D +GD+LDLVPI A++G G++ G                        +GFS+A  +E +      K+
Subjt:  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTG------------------------TGFSEAM-LEERSASLRSKV

Query:  IPEPKSYYRYGDTINPDVGLS
        + +   YYR G+T  PD+  S
Subjt:  IPEPKSYYRYGDTINPDVGLS

Sequences

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CDS sequence

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mRNA sequence

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ATGCCCTTCAATTCCATGGTTCAAATGAGGGGCAAGATCTTAGATTTCCAGAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAA
GAGGTCCCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAA
CTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTT
GGTTTGAGCCTACTGAGGGTGGTGCGAGTTTTCATACCCCCTCCTTTTTGGTATTGTGCCTGTGGTGAATTTAAGGTATTTGTTGCACCCTCTCCCTCTTTGCAAAAAGA
GAAGTCTGAAAATAACATGGAAAGAACCAAGAAGGTTGTTTTAGAGAGATTTTAGAATCAACAGATTCTGTTGGGACTTACATGGTTGAAGTTGAATGTCACTGGAGGTT
TCTTCTTATTTATCCTTTCCTAATGATCCTCTTTCAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAG
TCAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAA
CACAACCCCCAAAACAATCAAGATGACAATGAAGACGACTAAGGATTGAAGTTTTAACTCTTTCCAAACATGTTGCTCGCTTGGTTTTCAACCTGATAATCATTGGCCAA
TGGCAAATTAAATTGTCTGGTCATGGTGCCATGGACCATGT

Protein sequence

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MPFNSMVQMRGKILDFQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
GLSLLRVVRVFIPPPFWYCACGEFKVFVAPSPSLQKEKSENNMERTKKVVLERF

Clc02G22820 (gene) of Watermelon (cordophanus) v2 genome