; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G23650 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G23650
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPoly(A)-specific ribonuclease
Genome locationClcChr02:35565679..35567146
RNA-Seq ExpressionClc02G23650
SyntenyClc02G23650
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0043229 - intracellular organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035921.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-6761.74Show/hide
Query:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS
        MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIWEFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+
Subjt:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS

Query:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                                                            AFFGNKVYDVKHMMRFCD LYGGL+RVA TLAVDRAVGKCHQAGSD L
Subjt:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        LTW AFQKMRDVYF KDGPEKHAGVLYGLE
Subjt:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

XP_022957732.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata]3.9e-6761.74Show/hide
Query:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS
        MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIWEFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+
Subjt:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS

Query:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                                                            AFFGNKVYDVKHMMRFCD LYGGL+RVA TLAVDRAVGKCHQAGSD L
Subjt:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        LTW AFQKMRDVYF KDGPEKHAGVLYGLE
Subjt:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

XP_022995114.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]3.9e-6761.74Show/hide
Query:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS
        MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIWEFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+
Subjt:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS

Query:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                                                            AFFGNKVYDVKHMMRFCD LYGGL+RVA TLAVDRAVGKCHQAGSD L
Subjt:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        LTW AFQKMRDVYF KDGPEKHAGVLYGLE
Subjt:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

XP_023534188.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo]3.9e-6761.74Show/hide
Query:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS
        MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIWEFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+
Subjt:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS

Query:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                                                            AFFGNKVYDVKHMMRFCD LYGGL+RVA TLAVDRAVGKCHQAGSD L
Subjt:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        LTW AFQKMRDVYF KDGPEKHAGVLYGLE
Subjt:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

XP_038901771.1 probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]1.3e-6762.5Show/hide
Query:  MDTEFPGVLI---------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-
        MDTEFPGV+I         RPSDHYLLLKS+VDALNLIQ+GLTL           T   FIWEFNFRDFDV RDLHAPDSI LLKRQGIDFERNR+HGV 
Subjt:  MDTEFPGVLI---------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-

Query:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSD
                                HS+  F                          FGNKVYDVKHMMRFCDGLYGGLDRVA TLAVDRAVGK HQAGSD
Subjt:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSD

Query:  GLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
         LLTWQAFQKMRDVYF KDGPEKHAGVLYGLE
Subjt:  GLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

TrEMBL top hitse value%identityAlignment
A0A1S3BNU2 Poly(A)-specific ribonuclease1.6e-6158.62Show/hide
Query:  MDTEFPGVLIR---------PSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-
        +DTEFPGVLIR         PSDHYLLLKS+VDALNLIQLGLTL           T  +FIWEFNFRDFDVAR  H P SI LLK+QGIDF RNR HGV 
Subjt:  MDTEFPGVLIR---------PSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-

Query:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSD
                                HS+  F                          FGNKVYDVKHMMRFCDGLYGGLDRVA TL ++RAVGK HQAGSD
Subjt:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSD

Query:  GLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
         LLTWQAF+KMRDVYF KDGPEKHAGVL+GLE
Subjt:  GLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

A0A5D3B887 Poly(A)-specific ribonuclease1.6e-6158.62Show/hide
Query:  MDTEFPGVLIR---------PSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-
        +DTEFPGVLIR         PSDHYLLLKS+VDALNLIQLGLTL           T  +FIWEFNFRDFDVAR  H P SI LLK+QGIDF RNR HGV 
Subjt:  MDTEFPGVLIR---------PSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-

Query:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSD
                                HS+  F                          FGNKVYDVKHMMRFCDGLYGGLDRVA TL ++RAVGK HQAGSD
Subjt:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSD

Query:  GLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
         LLTWQAF+KMRDVYF KDGPEKHAGVL+GLE
Subjt:  GLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

A0A6J1GZY2 Poly(A)-specific ribonuclease1.9e-6761.74Show/hide
Query:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS
        MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIWEFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+
Subjt:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS

Query:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                                                            AFFGNKVYDVKHMMRFCD LYGGL+RVA TLAVDRAVGKCHQAGSD L
Subjt:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        LTW AFQKMRDVYF KDGPEKHAGVLYGLE
Subjt:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

A0A6J1K4S7 Poly(A)-specific ribonuclease1.9e-6761.74Show/hide
Query:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS
        MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIWEFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+
Subjt:  MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS

Query:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                                                            AFFGNKVYDVKHMMRFCD LYGGL+RVA TLAVDRAVGKCHQAGSD L
Subjt:  ---------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        LTW AFQKMRDVYF KDGPEKHAGVLYGLE
Subjt:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

A0A6P3Z4L2 Poly(A)-specific ribonuclease1.6e-6155.51Show/hide
Query:  MDTEFPGVL-------------IRPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRV
        MDTEFPG++             +RPSDHYLLLKS+VDALNLIQ+GLTL           +H  FIWEFNF DFDV+RD HAPDSI LL+RQGIDF+RNR 
Subjt:  MDTEFPGVL-------------IRPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRV

Query:  HGV-------------------------HSSL--------------------------AFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQ
         G+                         HS+                            FFGN+VYD+KHMMRFC  LYGGLDRVA TL VDRAVGKCHQ
Subjt:  HGV-------------------------HSSL--------------------------AFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQ

Query:  AGSDGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        AGSD LLTW AFQKMRDVYF+ DGPEKHAGVLYGLE
Subjt:  AGSDGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

SwissProt top hitse value%identityAlignment
Q9FMS6 Probable CCR4-associated factor 1 homolog 111.6e-5551.27Show/hide
Query:  MDTEFPGVLIR----------PSDHYLLLKSDVDALNLIQLGLTL------------RTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVH
        MDTEFPGV+ +          P+  Y LLKS+VDAL+LIQ+GLTL            + ++ +IWEFNFRDFDV RD HAPDSI LL+R GIDFERNR  
Subjt:  MDTEFPGVLIR----------PSDHYLLLKSDVDALNLIQLGLTL------------RTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVH

Query:  GVHSS---------------------------------------------------LAFFGNKVYDVKHMMRFCD-GLYGGLDRVANTLAVDRAVGKCHQ
        GV S                                                     AFFG++VYDVKH+MRFC+  LYGGLDRVA +L V+RAVGKCHQ
Subjt:  GVHSS---------------------------------------------------LAFFGNKVYDVKHMMRFCD-GLYGGLDRVANTLAVDRAVGKCHQ

Query:  AGSDGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        AGSD LLTWQAFQ+MRD+YF++DG EKHAGVLYGLE
Subjt:  AGSDGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

Q9LEU4 Probable CCR4-associated factor 1 homolog 101.9e-3237.12Show/hide
Query:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH-
        MDTEFPGV+++P          +Y  LK +VD L LIQ+GLT            T +  IW+FNFR+F++  D++A +SI LL++ GIDF++N   G+  
Subjt:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH-

Query:  ------------------SSLAFFGN-------------------------------KVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                          S + F G                                 VYD+KH+M FC+GL+GGL+R+A  + V+R VG CHQAGSD L
Subjt:  ------------------SSLAFFGN-------------------------------KVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGL
        LT  +F+K+++ YF     EK+ GVLYGL
Subjt:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGL

Q9LXM2 Probable CCR4-associated factor 1 homolog 91.7e-5753.22Show/hide
Query:  MDTEFPGVLIR-------PSDHYLLLKSDVDALNLIQLGLTLR------------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-
        MDTEFPGV+ +       P D Y LLK++VDAL+LIQ+GLTL              H+ FIWEFNFRDFDVARD HAPDSI LL+RQGIDFERN   GV 
Subjt:  MDTEFPGVLIR-------PSDHYLLLKSDVDALNLIQLGLTLR------------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-

Query:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCD-GLYGGLDRVANTLAVDRAVGKCHQAGS
                                HS+  F                          FG +VYDVKHMM+FC+  L+GGLDRVA TL V+RAVGKCHQAGS
Subjt:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCD-GLYGGLDRVANTLAVDRAVGKCHQAGS

Query:  DGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        D LLTW AFQ+MRD+YF++DGPEKHAGVLYGLE
Subjt:  DGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

Q9SAI2 Probable CCR4-associated factor 1 homolog 65.6e-3237.39Show/hide
Query:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--
        MDTEFPG+++RP          HY  LK++V+ L +IQLGLT            T +  IW+FNFR+FD+  D+ A DSI LLK+ GID  +N + G+  
Subjt:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--

Query:  -----------------------HSSLAF-------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                               HS   F                         +   VYD+KH+M+FC+ L+GGL+++A  L V+R VG CHQAGSD L
Subjt:  -----------------------HSSLAF-------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGP-EKHAGVLYGL
        LT   F+K+++ +F+  GP  K++GVLYGL
Subjt:  LTWQAFQKMRDVYFLKDGP-EKHAGVLYGL

Q9SKZ2 Probable CCR4-associated factor 1 homolog 72.5e-3235.65Show/hide
Query:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTL-----------RTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH
        MDTEFPG++ RP          HY  LK++V+ L +IQLGLT              ++  IW+FNFR+FD+  D++A DSI LL++ GIDF +N   G+ 
Subjt:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTL-----------RTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH

Query:  SS--------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDG
        S                                                   ++ +  +VYD+KH+M+FC+ L+GGL+++A  L V+R VG CHQAGSD 
Subjt:  SS--------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDG

Query:  LLTWQAFQKMRDVYFLKDGPEKHAGVLYGL
        LLT   F+K+++ +F+    EK++GVLYGL
Subjt:  LLTWQAFQKMRDVYFLKDGPEKHAGVLYGL

Arabidopsis top hitse value%identityAlignment
AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.0e-3337.39Show/hide
Query:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--
        MDTEFPG+++RP          HY  LK++V+ L +IQLGLT            T +  IW+FNFR+FD+  D+ A DSI LLK+ GID  +N + G+  
Subjt:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--

Query:  -----------------------HSSLAF-------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                               HS   F                         +   VYD+KH+M+FC+ L+GGL+++A  L V+R VG CHQAGSD L
Subjt:  -----------------------HSSLAF-------------------------FGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGP-EKHAGVLYGL
        LT   F+K+++ +F+  GP  K++GVLYGL
Subjt:  LTWQAFQKMRDVYFLKDGP-EKHAGVLYGL

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-3335.65Show/hide
Query:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTL-----------RTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH
        MDTEFPG++ RP          HY  LK++V+ L +IQLGLT              ++  IW+FNFR+FD+  D++A DSI LL++ GIDF +N   G+ 
Subjt:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTL-----------RTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH

Query:  SS--------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDG
        S                                                   ++ +  +VYD+KH+M+FC+ L+GGL+++A  L V+R VG CHQAGSD 
Subjt:  SS--------------------------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDG

Query:  LLTWQAFQKMRDVYFLKDGPEKHAGVLYGL
        LLT   F+K+++ +F+    EK++GVLYGL
Subjt:  LLTWQAFQKMRDVYFLKDGPEKHAGVLYGL

AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-5853.22Show/hide
Query:  MDTEFPGVLIR-------PSDHYLLLKSDVDALNLIQLGLTLR------------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-
        MDTEFPGV+ +       P D Y LLK++VDAL+LIQ+GLTL              H+ FIWEFNFRDFDVARD HAPDSI LL+RQGIDFERN   GV 
Subjt:  MDTEFPGVLIR-------PSDHYLLLKSDVDALNLIQLGLTLR------------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV-

Query:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCD-GLYGGLDRVANTLAVDRAVGKCHQAGS
                                HS+  F                          FG +VYDVKHMM+FC+  L+GGLDRVA TL V+RAVGKCHQAGS
Subjt:  ------------------------HSSLAF--------------------------FGNKVYDVKHMMRFCD-GLYGGLDRVANTLAVDRAVGKCHQAGS

Query:  DGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        D LLTW AFQ+MRD+YF++DGPEKHAGVLYGLE
Subjt:  DGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE

AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-3337.12Show/hide
Query:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH-
        MDTEFPGV+++P          +Y  LK +VD L LIQ+GLT            T +  IW+FNFR+F++  D++A +SI LL++ GIDF++N   G+  
Subjt:  MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH-

Query:  ------------------SSLAFFGN-------------------------------KVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL
                          S + F G                                 VYD+KH+M FC+GL+GGL+R+A  + V+R VG CHQAGSD L
Subjt:  ------------------SSLAFFGN-------------------------------KVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDGL

Query:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGL
        LT  +F+K+++ YF     EK+ GVLYGL
Subjt:  LTWQAFQKMRDVYFLKDGPEKHAGVLYGL

AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-5651.27Show/hide
Query:  MDTEFPGVLIR----------PSDHYLLLKSDVDALNLIQLGLTL------------RTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVH
        MDTEFPGV+ +          P+  Y LLKS+VDAL+LIQ+GLTL            + ++ +IWEFNFRDFDV RD HAPDSI LL+R GIDFERNR  
Subjt:  MDTEFPGVLIR----------PSDHYLLLKSDVDALNLIQLGLTL------------RTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVH

Query:  GVHSS---------------------------------------------------LAFFGNKVYDVKHMMRFCD-GLYGGLDRVANTLAVDRAVGKCHQ
        GV S                                                     AFFG++VYDVKH+MRFC+  LYGGLDRVA +L V+RAVGKCHQ
Subjt:  GVHSS---------------------------------------------------LAFFGNKVYDVKHMMRFCD-GLYGGLDRVANTLAVDRAVGKCHQ

Query:  AGSDGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE
        AGSD LLTWQAFQ+MRD+YF++DG EKHAGVLYGLE
Subjt:  AGSDGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACTGAATTCCCCGGCGTCCTCATCCGCCCCTCCGATCACTACCTTCTCCTCAAGTCCGACGTCGACGCTCTCAACCTAATCCAACTCGGTCTCACCCTCCGCAC
CCACCAGACCTTCATTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCGTGACCTTCACGCGCCCGATTCCATCCATCTCTTGAAACGACAGGGCATTGATTTCGAAC
GCAACAGAGTTCACGGGGTTCACTCTTCTTTGGCCTTCTTTGGGAATAAGGTTTATGACGTCAAGCATATGATGCGGTTCTGTGATGGCCTTTATGGAGGCTTGGACCGG
GTTGCTAACACGCTTGCGGTGGACCGGGCGGTCGGAAAATGCCACCAAGCCGGTTCTGATGGCTTGCTGACGTGGCAAGCTTTCCAGAAGATGAGGGACGTCTATTTCTT
AAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTATGGATTAGAAAGATTATGTATGGGCTGCCATTCTGATGGGCGAAGCCCTGGTCCGCCGTTATGGAAGGGTAGCA
AAAGAGTTCTTGTTGCTGTGCGAAGTCGAGGTCTGCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACACTGAATTCCCCGGCGTCCTCATCCGCCCCTCCGATCACTACCTTCTCCTCAAGTCCGACGTCGACGCTCTCAACCTAATCCAACTCGGTCTCACCCTCCGCAC
CCACCAGACCTTCATTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCGTGACCTTCACGCGCCCGATTCCATCCATCTCTTGAAACGACAGGGCATTGATTTCGAAC
GCAACAGAGTTCACGGGGTTCACTCTTCTTTGGCCTTCTTTGGGAATAAGGTTTATGACGTCAAGCATATGATGCGGTTCTGTGATGGCCTTTATGGAGGCTTGGACCGG
GTTGCTAACACGCTTGCGGTGGACCGGGCGGTCGGAAAATGCCACCAAGCCGGTTCTGATGGCTTGCTGACGTGGCAAGCTTTCCAGAAGATGAGGGACGTCTATTTCTT
AAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTATGGATTAGAAAGATTATGTATGGGCTGCCATTCTGATGGGCGAAGCCCTGGTCCGCCGTTATGGAAGGGTAGCA
AAAGAGTTCTTGTTGCTGTGCGAAGTCGAGGTCTGCCGTAG
Protein sequenceShow/hide protein sequence
MDTEFPGVLIRPSDHYLLLKSDVDALNLIQLGLTLRTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSSLAFFGNKVYDVKHMMRFCDGLYGGLDR
VANTLAVDRAVGKCHQAGSDGLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLERLCMGCHSDGRSPGPPLWKGSKRVLVAVRSRGLP