; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G24490 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G24490
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNuclear transcription factor Y subunit
Genome locationClcChr02:36304893..36310378
RNA-Seq ExpressionClc02G24490
SyntenyClc02G24490
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001289 - Nuclear transcription factor Y subunit A
IPR018362 - CCAAT-binding factor, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449708.1 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis melo]1.5e-16895.12Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS
        MQSKSKSVN   SEPPNMQQTSSYSEPWWRSIGYNHISPP AGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQ+NCQHAVS
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS

Query:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
        AAP VH GCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
Subjt:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR

Query:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY
        KPYLHESRHQHAMRRARGSGGRFAKKNE NS  ST+KDKDSGSGQAISSHSAGSSGSEAA CALAETWNSSNGQQE RTQLHEAYEARSYVNGSSQFHNY
Subjt:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY

Query:  SSFQASPYGLRSGERGEDGDCSGQQRSV
        SSFQAS YGLRSGERG+DGDCSGQQRS+
Subjt:  SSFQASPYGLRSGERGEDGDCSGQQRSV

XP_011657641.1 nuclear transcription factor Y subunit A-1 isoform X1 [Cucumis sativus]8.7e-16994.21Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS
        MQSKSKSVN L SEPPNMQQTSS+SEPWWRSIGYNHISPP AGGNVSNSTSLECTNGASESNDGQSMSNDDLNE+DDD+TTKDSHAS+GQVQHNCQHAVS
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS

Query:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
        AAP VH GCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
Subjt:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR

Query:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY
        KPYLHESRHQHAMRRARGSGGRFAKKNE NS  ST+KDKDSGSGQAISSHSAGSSGS+AAPCALAETWNSSNGQQE RTQLHEAYEARSY+NGSSQFHNY
Subjt:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY

Query:  SSFQASPYGLRSGERGEDGDCSGQQRSV
        SSFQAS YGLRSGERG+DGDCSGQQRS+
Subjt:  SSFQASPYGLRSGERGEDGDCSGQQRSV

XP_011657643.1 nuclear transcription factor Y subunit A-1 isoform X2 [Cucumis sativus]6.5e-16492.68Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS
        MQSKSKSVN L SEPPNMQQTSS+SEPWWRSIGYNHISPP AGGNVSNSTSLECTNGASESNDGQSMSNDDLNE+DDD+TTKDSHAS+GQVQHNCQHAVS
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS

Query:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
        AAP VH GCITQPPQLEL     ACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
Subjt:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR

Query:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY
        KPYLHESRHQHAMRRARGSGGRFAKKNE NS  ST+KDKDSGSGQAISSHSAGSSGS+AAPCALAETWNSSNGQQE RTQLHEAYEARSY+NGSSQFHNY
Subjt:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY

Query:  SSFQASPYGLRSGERGEDGDCSGQQRSV
        SSFQAS YGLRSGERG+DGDCSGQQRS+
Subjt:  SSFQASPYGLRSGERGEDGDCSGQQRSV

XP_022986703.1 nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita maxima]1.1e-16391.59Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA-SYGQVQHNCQHAV
        MQSK +SVN L SEPPNMQQTSSYSEPWWRSIGYNHIS P AGGN+SNSTSLEC NGASESNDG SMSNDDLNEDDDDDTTKDSHA SYGQVQ+NCQHAV
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA-SYGQVQHNCQHAV

Query:  SAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV
        SAAPTVHGGCITQPPQLELVGHSIACASN YQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIK+
Subjt:  SAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV

Query:  RKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHN
        RKPYLHESRHQHAMRRARGSGGRFAKKNE NSSSST+K+KDSGSGQA SSHSAGSSGSEAAPCALAETWNSSNGQQE RTQLHEAYEARSYVNGS QFHN
Subjt:  RKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHN

Query:  YSSFQASPYGLRSGERGEDGDCSGQQRSVLRKS
        YSSFQAS Y LRSGERG+DGDCSGQQR  + ++
Subjt:  YSSFQASPYGLRSGERGEDGDCSGQQRSVLRKS

XP_038901586.1 nuclear transcription factor Y subunit A-1-like isoform X1 [Benincasa hispida]2.1e-16794.82Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS
        MQSKSKSVN L SEPPNMQQTS Y+EPWWRSIGYNHIS PPAGGN+SNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQ AVS
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS

Query:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
        AAPTVHGGC+TQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
Subjt:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR

Query:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY
        KPYLHESRHQHAMRRARGSGGRFAKKNEANS SST+KDKDS SGQAISSHSAGSSGSEAAPCALAETWNSS+GQQE RTQLHEAYEARSYVN  SQFHNY
Subjt:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY

Query:  SSFQASPYGLRSGERGEDGDCSGQQRSV
        SSFQAS YGLRSGERGEDGDCSGQQRS+
Subjt:  SSFQASPYGLRSGERGEDGDCSGQQRSV

TrEMBL top hitse value%identityAlignment
A0A0A0KEL9 Nuclear transcription factor Y subunit4.2e-16994.21Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS
        MQSKSKSVN L SEPPNMQQTSS+SEPWWRSIGYNHISPP AGGNVSNSTSLECTNGASESNDGQSMSNDDLNE+DDD+TTKDSHAS+GQVQHNCQHAVS
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS

Query:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
        AAP VH GCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
Subjt:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR

Query:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY
        KPYLHESRHQHAMRRARGSGGRFAKKNE NS  ST+KDKDSGSGQAISSHSAGSSGS+AAPCALAETWNSSNGQQE RTQLHEAYEARSY+NGSSQFHNY
Subjt:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY

Query:  SSFQASPYGLRSGERGEDGDCSGQQRSV
        SSFQAS YGLRSGERG+DGDCSGQQRS+
Subjt:  SSFQASPYGLRSGERGEDGDCSGQQRSV

A0A1S3BNK4 Nuclear transcription factor Y subunit7.2e-16995.12Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS
        MQSKSKSVN   SEPPNMQQTSSYSEPWWRSIGYNHISPP AGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQ+NCQHAVS
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS

Query:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
        AAP VH GCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
Subjt:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR

Query:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY
        KPYLHESRHQHAMRRARGSGGRFAKKNE NS  ST+KDKDSGSGQAISSHSAGSSGSEAA CALAETWNSSNGQQE RTQLHEAYEARSYVNGSSQFHNY
Subjt:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY

Query:  SSFQASPYGLRSGERGEDGDCSGQQRSV
        SSFQAS YGLRSGERG+DGDCSGQQRS+
Subjt:  SSFQASPYGLRSGERGEDGDCSGQQRSV

A0A1S4DXQ9 Nuclear transcription factor Y subunit5.3e-16493.6Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS
        MQSKSKSVN   SEPPNMQQTSSYSEPWWRSIGYNHISPP AGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQ+NCQHAVS
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS

Query:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
        AAP VH GCITQPPQLEL     ACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR
Subjt:  AAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVR

Query:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY
        KPYLHESRHQHAMRRARGSGGRFAKKNE NS  ST+KDKDSGSGQAISSHSAGSSGSEAA CALAETWNSSNGQQE RTQLHEAYEARSYVNGSSQFHNY
Subjt:  KPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNY

Query:  SSFQASPYGLRSGERGEDGDCSGQQRSV
        SSFQAS YGLRSGERG+DGDCSGQQRS+
Subjt:  SSFQASPYGLRSGERGEDGDCSGQQRSV

A0A6J1FTP1 Nuclear transcription factor Y subunit1.7e-16290.99Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA-SYGQVQHNCQHAV
        MQSK +SVN L SEPPNMQQTSSYSEPWWRSIGYN ISPP AGGN+SNSTSLEC NGASESNDG SMSNDDLNEDDDDDTTKDSHA SYGQVQ+N QHAV
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA-SYGQVQHNCQHAV

Query:  SAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV
        SAAPTVHGGCITQPPQLELVGHSIACASN YQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIK+
Subjt:  SAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV

Query:  RKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHN
        RKPYLHESRHQHAMRRARGSGGRFAKKNE NSSSST+K+KDSGSGQA SSHSAGSSGSEAAPCALAETWNSSNGQQE RTQLHEAY+ARSYVNGS QFHN
Subjt:  RKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHN

Query:  YSSFQASPYGLRSGERGEDGDCSGQQRSVLRKS
        YSSFQAS Y LRSGERG+DGDCSGQQR  + ++
Subjt:  YSSFQASPYGLRSGERGEDGDCSGQQRSVLRKS

A0A6J1JHB5 Nuclear transcription factor Y subunit5.3e-16491.59Show/hide
Query:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA-SYGQVQHNCQHAV
        MQSK +SVN L SEPPNMQQTSSYSEPWWRSIGYNHIS P AGGN+SNSTSLEC NGASESNDG SMSNDDLNEDDDDDTTKDSHA SYGQVQ+NCQHAV
Subjt:  MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA-SYGQVQHNCQHAV

Query:  SAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV
        SAAPTVHGGCITQPPQLELVGHSIACASN YQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIK+
Subjt:  SAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV

Query:  RKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHN
        RKPYLHESRHQHAMRRARGSGGRFAKKNE NSSSST+K+KDSGSGQA SSHSAGSSGSEAAPCALAETWNSSNGQQE RTQLHEAYEARSYVNGS QFHN
Subjt:  RKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHN

Query:  YSSFQASPYGLRSGERGEDGDCSGQQRSVLRKS
        YSSFQAS Y LRSGERG+DGDCSGQQR  + ++
Subjt:  YSSFQASPYGLRSGERGEDGDCSGQQRSVLRKS

SwissProt top hitse value%identityAlignment
Q84JP1 Nuclear transcription factor Y subunit A-71.3e-2146.43Show/hide
Query:  HSIACASNPYQDPYYAGVMA--AYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG
        +S+A    PY DPYY  + A     +   +   +G+    + LP +  +EPVFVNAKQY GILRRRQ+RA+ E +NK+IK RKPYLHESRH HA+RR RG
Subjt:  HSIACASNPYQDPYYAGVMA--AYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG

Query:  SGGRF--AKKNEANSSSSTLKDKDS-GSGQAISSHSAGSS
         GGRF  AKK + +   S+ ++K +  +G++  + S+G+S
Subjt:  SGGRF--AKKNEANSSSSTLKDKDS-GSGQAISSHSAGSS

Q8VY64 Nuclear transcription factor Y subunit A-43.7e-2149.22Show/hide
Query:  PYQDPYYAGVMAAYGHQP-GYP----PFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRF
        PY DPYY  V A   + P  YP      +GM    + L  +  +EPVFVNAKQY GILRRRQ+RAK E  N+ IK +KPY+HESRH HA+RR RG GGRF
Subjt:  PYQDPYYAGVMAAYGHQP-GYP----PFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRF

Query:  --AKKNEANSSSSTLKDKDSGSGQAISS
          AKK   +         D  + +A SS
Subjt:  --AKKNEANSSSSTLKDKDSGSGQAISS

Q945M9 Nuclear transcription factor Y subunit A-92.4e-4442.73Show/hide
Query:  MQSKSKS-VNHLGSEPPNMQQTSSYS-EPWWR-SIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDD--LNEDDDDDTTKDSHASYGQVQHNC
        M SKS S  N + SE      +S  S  PW R +   N  S   AG   S S +L     A ESN  +S SN D  +N++    T+  S   Y       
Subjt:  MQSKSKS-VNHLGSEPPNMQQTSSYS-EPWWR-SIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDD--LNEDDDDDTTKDSHASYGQVQHNC

Query:  QHAVSAAPTVHGGCITQPPQLELVGHSIACA-SNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVE
                ++H G    PP  +LVGH++  A SNPYQDPYYAGVM AYGH P G+ P+ GMPH+RM LP E+ QEPVFVNAKQYQ ILRRRQARAKAE+E
Subjt:  QHAVSAAPTVHGGCITQPPQLELVGHSIACA-SNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVE

Query:  NKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNG
         KLIK RKPYLHESRHQHAMRR RG+GGRFAKK   N+ +S  K ++  +G    S S+ +S          E WN      + RT   +  ++ +Y   
Subjt:  NKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNG

Query:  SSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVLRKSGCTEA
                            +R E+G+CSGQQ + L  +  ++A
Subjt:  SSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVLRKSGCTEA

Q9LVJ7 Nuclear transcription factor Y subunit A-64.8e-2153.7Show/hide
Query:  PYYAGVMA---AYGHQPGYPPFLGMPHARMALPLEVTQ-EPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNE
        P++ G ++   A  H   +P   G+  +RM LP  + + EP+FVNAKQYQ ILRRR+ RAK E +NKLIKVRKPYLHESRH HA++R RGSGGRF    +
Subjt:  PYYAGVMA---AYGHQPGYPPFLGMPHARMALPLEVTQ-EPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNE

Query:  ANSSSSTL
           S+S+L
Subjt:  ANSSSSTL

Q9LXV5 Nuclear transcription factor Y subunit A-18.2e-5351.54Show/hide
Query:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA--SYGQVQHNCQHAVSAAPTV---HGGCITQ
        +QQ   Y+EPWW++  +  +      G  SNS+SL+C NG SESND  S S D     ++D T KDS A  S   V ++       A ++   H   + Q
Subjt:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA--SYGQVQHNCQHAVSAAPTV---HGGCITQ

Query:  PPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQH
        PP  ELVGH IAC  NPYQDPYY G+M AYGHQ  G+ P+LGMP  R ALPL++ QEPV+VNAKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+H
Subjt:  PPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQH

Query:  AMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS
        AMRRAR SGGRFAKK+E  +       +D+G        +  SSGSE       ET NSS
Subjt:  AMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS

Arabidopsis top hitse value%identityAlignment
AT3G20910.1 nuclear factor Y, subunit A91.7e-4542.73Show/hide
Query:  MQSKSKS-VNHLGSEPPNMQQTSSYS-EPWWR-SIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDD--LNEDDDDDTTKDSHASYGQVQHNC
        M SKS S  N + SE      +S  S  PW R +   N  S   AG   S S +L     A ESN  +S SN D  +N++    T+  S   Y       
Subjt:  MQSKSKS-VNHLGSEPPNMQQTSSYS-EPWWR-SIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDD--LNEDDDDDTTKDSHASYGQVQHNC

Query:  QHAVSAAPTVHGGCITQPPQLELVGHSIACA-SNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVE
                ++H G    PP  +LVGH++  A SNPYQDPYYAGVM AYGH P G+ P+ GMPH+RM LP E+ QEPVFVNAKQYQ ILRRRQARAKAE+E
Subjt:  QHAVSAAPTVHGGCITQPPQLELVGHSIACA-SNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVE

Query:  NKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNG
         KLIK RKPYLHESRHQHAMRR RG+GGRFAKK   N+ +S  K ++  +G    S S+ +S          E WN      + RT   +  ++ +Y   
Subjt:  NKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNG

Query:  SSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVLRKSGCTEA
                            +R E+G+CSGQQ + L  +  ++A
Subjt:  SSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVLRKSGCTEA

AT5G12840.1 nuclear factor Y, subunit A15.8e-5451.54Show/hide
Query:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA--SYGQVQHNCQHAVSAAPTV---HGGCITQ
        +QQ   Y+EPWW++  +  +      G  SNS+SL+C NG SESND  S S D     ++D T KDS A  S   V ++       A ++   H   + Q
Subjt:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA--SYGQVQHNCQHAVSAAPTV---HGGCITQ

Query:  PPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQH
        PP  ELVGH IAC  NPYQDPYY G+M AYGHQ  G+ P+LGMP  R ALPL++ QEPV+VNAKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+H
Subjt:  PPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQH

Query:  AMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS
        AMRRAR SGGRFAKK+E  +       +D+G        +  SSGSE       ET NSS
Subjt:  AMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS

AT5G12840.2 nuclear factor Y, subunit A13.4e-5450.96Show/hide
Query:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS------AAPTVHGGCIT
        +QQ   Y+EPWW++  +  +      G  SNS+SL+C NG SESND  S S D     ++D T KDS A+      N  H +       +   +H   + 
Subjt:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS------AAPTVHGGCIT

Query:  QPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQ
        QPP  ELVGH IAC  NPYQDPYY G+M AYGHQ  G+ P+LGMP  R ALPL++ QEPV+VNAKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+
Subjt:  QPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQ

Query:  HAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS
        HAMRRAR SGGRFAKK+E  +       +D+G        +  SSGSE       ET NSS
Subjt:  HAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS

AT5G12840.3 nuclear factor Y, subunit A15.8e-5451.54Show/hide
Query:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA--SYGQVQHNCQHAVSAAPTV---HGGCITQ
        +QQ   Y+EPWW++  +  +      G  SNS+SL+C NG SESND  S S D     ++D T KDS A  S   V ++       A ++   H   + Q
Subjt:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHA--SYGQVQHNCQHAVSAAPTV---HGGCITQ

Query:  PPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQH
        PP  ELVGH IAC  NPYQDPYY G+M AYGHQ  G+ P+LGMP  R ALPL++ QEPV+VNAKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+H
Subjt:  PPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQH

Query:  AMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS
        AMRRAR SGGRFAKK+E  +       +D+G        +  SSGSE       ET NSS
Subjt:  AMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS

AT5G12840.4 nuclear factor Y, subunit A13.4e-5450.96Show/hide
Query:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS------AAPTVHGGCIT
        +QQ   Y+EPWW++  +  +      G  SNS+SL+C NG SESND  S S D     ++D T KDS A+      N  H +       +   +H   + 
Subjt:  MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVS------AAPTVHGGCIT

Query:  QPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQ
        QPP  ELVGH IAC  NPYQDPYY G+M AYGHQ  G+ P+LGMP  R ALPL++ QEPV+VNAKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+
Subjt:  QPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQ

Query:  HAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS
        HAMRRAR SGGRFAKK+E  +       +D+G        +  SSGSE       ET NSS
Subjt:  HAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCGAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAACCATAT
CTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATG
AAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATC
ACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGG
TTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAA
GACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGT
GGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCATTCTGCTGGTTCATCTGGTTC
TGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACGGCA
GTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCCTCAGA
AAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGAACCTCCTGGTTGCAAAATTATCGGGTGCCCCTAGGTTATCTTTGGGGCTGCATTCCCTGGCAGTTTTCTGCTA
G
mRNA sequenceShow/hide mRNA sequence
ACGTGGCATGCGCTGCTGTCGCTACTTTAAAGATGCGGTCCCCACTTTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAAGTGCGTGTCACGTGGGTCAAAATATATTA
TCCCAATTTCCACTTTTTATCCTGAAAATCGAATTTCCATAACCTCACCCGGCCGTGAGATTCAGTAGCTCACGACCCACGTCAACTGGGAACCCTCTTTAGCCGGTTGA
CTCGTCTGATTGACATCGAAACTTGGATGTCTTAGTCCGGTACTGGAAGGGCAGGTTGCCGGTGGATGAGTAGCTGGAACTGAAATGGGGTCCCGCAGTGGGTGAAGGAA
CAGTAGCCGTAGCTCTTGAATTTGAGTTCCCAAAAGGGTCGTTGCTTTACTCCAATTACTGTGCTCTCTCAGTATGAGAATCGCTCAAGAACTGAATTGACTCTTCAATT
CTTCTCTCTCTTTCTGTTTTTTTTTTTTTCTTTTTTCCCATATTCCCAGCGGTTGTTTCCTGAATCTAGGGCTTTGGATTTCCAGAATTTTCCATCCAAGTATGCAGTCG
AAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAACCATATCTCCCCGCC
ACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATG
ATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCT
CCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCC
TTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCAC
GTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTT
GCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCATTCTGCTGGTTCATCTGGTTCTGAAGCAGC
GCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACGGCAGTAGCCAAT
TCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCCTCAGAAAATCAGGC
TGCACAGAGGCGTCTTGCCATCAAGTGAACCTCCTGGTTGCAAAATTATCGGGTGCCCCTAGGTTATCTTTGGGGCTGCATTCCCTGGCAGTTTTCTGCTAG
Protein sequenceShow/hide protein sequence
MQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCI
TQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSG
GRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVLR
KSGCTEASCHQVNLLVAKLSGAPRLSLGLHSLAVFC