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Clc02G25775 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G25775
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionarabinogalactan peptide 13-like
Genome locationClcChr02:37327126..37327305
RNA-Seq ExpressionClc02G25775
SyntenyClc02G25775
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR039281 - Arabinogalactan protein 3/12/13/14/21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570311.1 hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sororia]6.4e-1383.05Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEAIKLKLFLV++L+AFAAT AQ A+PSEAPAPAPASDA LF PTFFASLSAL+FAF L
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

KAG6605834.1 Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia]1.5e-0973.33Show/hide
Query:  MEAIKLKLFLVLM-LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEA+KLKLFLVL+ L+AFA T+AQ+A+PSEAPAPAPASDA L Y +FFASLS L+FA+ L
Subjt:  MEAIKLKLFLVLM-LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

XP_022944304.1 arabinogalactan peptide 13-like [Cucurbita moschata]5.8e-1484.75Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEAIKLKLFLV++L+AFAAT AQ A+PSEAPAPAPASDA LFYPTFFASLSAL+FAF L
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

XP_023513159.1 arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo]1.0e-1079.66Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEAIKLKL LV++L+AFAAT AQ A+PSE  APAPASDA LFYPTFFASLSAL+FAF L
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

XP_038902540.1 arabinogalactan protein 13-like [Benincasa hispida]6.2e-1691.53Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEAIKLKLFLVL+L+AFA TIAQSA+PSEAPAPAPASDASLFYPTFFASLSALLFAF L
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

TrEMBL top hitse value%identityAlignment
A0A2I4G052 arabinogalactan protein 13-like1.8e-0554.55Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLF
        MEA+KLKLF+ ++++  A +  Q+A+ +EAPAP+P S+A++F PTFFASL+AL F
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLF

A0A438JV44 Arabinogalactan peptide 142.1e-0657.63Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEA+K+KLFL ++++  A +  Q A+ + APAPAPASDA++F PTFFASL+AL F F L
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

A0A6J1FWG8 arabinogalactan peptide 13-like2.8e-1484.75Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEAIKLKLFLV++L+AFAAT AQ A+PSEAPAPAPASDA LFYPTFFASLSAL+FAF L
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

A0A6J1J5K6 arabinogalactan peptide 13-like2.8e-1484.75Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEAIKLKLFLV++L+AFAAT AQ A+PSEAPAPAPASDA LFYPTFFASLSAL+FAF L
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

F6GUN4 Uncharacterized protein2.1e-0657.63Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL
        MEA+K+KLFL ++++  A +  Q A+ + APAPAPASDA++F PTFFASL+AL F F L
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

SwissProt top hitse value%identityAlignment
Q9LJD9 Arabinogalactan protein 124.3e-0449.15Show/hide
Query:  MEAIKLKLFLVLM--LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF
        ME++K+KL +VLM  ++AF+A +   A+ +EAPAP+P SDA++F P  FAS++AL   F
Subjt:  MEAIKLKLFLVLM--LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF

Q9LVC0 Arabinogalactan protein 141.3e-0548.28Show/hide
Query:  MEAIKLKLFLVLMLLAFA-ATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF
        MEA+K+KL++V+++   A +T+ Q+ +  +APAP+P SDAS F PTFFAS++ + F F
Subjt:  MEAIKLKLFLVLMLLAFA-ATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF

Q9STQ3 Arabinogalactan protein 134.6e-0650.88Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF
        MEA+K++LF+ +++ A A +  Q A+  EAPAP+P SDASL  P FFAS++ L F F
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF

Arabidopsis top hitse value%identityAlignment
AT1G55330.1 arabinogalactan protein 211.5e-0447.37Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF
        MEA+K+K+ + +M++A A + A +A+  EAPAP+P SDA++F P  FAS+ AL   F
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF

AT3G13520.1 arabinogalactan protein 123.1e-0549.15Show/hide
Query:  MEAIKLKLFLVLM--LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF
        ME++K+KL +VLM  ++AF+A +   A+ +EAPAP+P SDA++F P  FAS++AL   F
Subjt:  MEAIKLKLFLVLM--LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF

AT4G26320.1 arabinogalactan protein 133.3e-0750.88Show/hide
Query:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF
        MEA+K++LF+ +++ A A +  Q A+  EAPAP+P SDASL  P FFAS++ L F F
Subjt:  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF

AT5G56540.1 arabinogalactan protein 149.5e-0748.28Show/hide
Query:  MEAIKLKLFLVLMLLAFA-ATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF
        MEA+K+KL++V+++   A +T+ Q+ +  +APAP+P SDAS F PTFFAS++ + F F
Subjt:  MEAIKLKLFLVLMLLAFA-ATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCAATCAAGTTGAAGCTCTTCCTGGTGCTGATGCTACTGGCCTTTGCTGCCACCATTGCCCAATCTGCTTCTCCTTCTGAGGCTCCTGCTCCTGCCCCTGCCTC
TGATGCTTCTCTCTTTTACCCCACTTTCTTTGCTTCTCTTTCTGCTCTTCTTTTTGCCTTCTGCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCAATCAAGTTGAAGCTCTTCCTGGTGCTGATGCTACTGGCCTTTGCTGCCACCATTGCCCAATCTGCTTCTCCTTCTGAGGCTCCTGCTCCTGCCCCTGCCTC
TGATGCTTCTCTCTTTTACCCCACTTTCTTTGCTTCTCTTTCTGCTCTTCTTTTTGCCTTCTGCCTTTAA
Protein sequenceShow/hide protein sequence
MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL