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Clc02G25816 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G25816
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUbiquitin-conjugating enzyme
Genome locationClcChr02:37349944..37351839
RNA-Seq ExpressionClc02G25816
SyntenyClc02G25816
Gene Ontology termsGO:0044267 - cellular protein metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33927.1 ubiquitin-conjugating enzyme [Cucumis melo subsp. melo]2.8e-3760.84Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NT PANPVVS  KQ  PPAKTADSQSVLKRLQ                                SK+T+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

XP_022957735.1 ubiquitin-conjugating enzyme E2 20-like [Cucurbita moschata]2.5e-3862.24Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NTTPANPVVS  KQ  PPAKTADSQSVLKRLQ                                SKDT+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

XP_022995155.1 ubiquitin-conjugating enzyme E2 20-like [Cucurbita maxima]1.6e-3761.54Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NTTP+NPVVS  KQ  PPAK ADSQSVLKRLQ                                SKDT+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVDIY NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

XP_023533942.1 ubiquitin-conjugating enzyme E2 20-like [Cucurbita pepo subsp. pepo]1.9e-3862.94Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NTTPANPVVS  KQ  PPAKTADSQSVLKRLQ                                SKDT+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVDIY NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

XP_038900928.1 LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 20 [Benincasa hispida]7.3e-3861.54Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NTTPANPVVS  KQ  PPAKTADSQSVLKRLQ                                SK+T+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

TrEMBL top hitse value%identityAlignment
A0A0A0KF07 UBC core domain-containing protein1.3e-3760.84Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NT PANPVVS  KQ  PPAKTADSQSVLKRLQ                                SK+T+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

A0A5D3BA03 Ubiquitin-conjugating enzyme E2 20-like isoform X31.3e-3760.84Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NT PANPVVS  KQ  PPAKTADSQSVLKRLQ                                SK+T+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

A0A6J1H1C8 ubiquitin-conjugating enzyme E2 20-like1.2e-3862.24Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NTTPANPVVS  KQ  PPAKTADSQSVLKRLQ                                SKDT+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

A0A6J1K3C1 ubiquitin-conjugating enzyme E2 20-like7.8e-3861.54Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NTTP+NPVVS  KQ  PPAK ADSQSVLKRLQ                                SKDT+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVDIY NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

E5GBT5 Ubiquitin-conjugating enzyme1.3e-3760.84Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  INRYT+NT PANPVVS  KQ  PPAKTADSQSVLKRLQ                                SK+T+FEGTEYRLSFS PN+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

SwissProt top hitse value%identityAlignment
Q54XS6 Probable ubiquitin-conjugating enzyme E2 C3.3e-1752.86Show/hide
Query:  SKDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        +KDT++E  E+++S   P +YP+KPP VKFET CFHPNVD   NICLDIL+DKWS   + ++ L  +++L
Subjt:  SKDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

Q8L7T3 Ubiquitin-conjugating enzyme E2 205.2e-3151.75Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  +N Y  NT    P  +  KQ + P KT DSQSVLKRLQ                                SKDT+FEGTEYRLS S  N+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

Q95044 Ubiquitin-conjugating enzyme E2 C1.4e-1549.28Show/hide
Query:  KDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        KDT++E  +Y+L+   P++YP+KPP VKF T C+HPNVD   NICLDIL++ W+++ D +T L  +++L
Subjt:  KDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

Q9LJZ5 Ubiquitin-conjugating enzyme E2 191.5e-3051.39Show/hide
Query:  MVVINRYTNNTTPA-NPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPP
        M  +N YT NT  A  P  +  KQ +PP KT DS SVLKRLQ                                SKDT+FEGTEYRLS +  N+YPFK P
Subjt:  MVVINRYTNNTTPA-NPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPP

Query:  KVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        KVKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  KVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

Q9VTY6 Ubiquitin-conjugating enzyme E2 C2.8e-1653.62Show/hide
Query:  KDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        ++T++ G  YRLS   PN+YP+  P VKF TSCFHPNVD+   ICLDIL+DKWS+  D +T L  +++L
Subjt:  KDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

Arabidopsis top hitse value%identityAlignment
AT1G50490.1 ubiquitin-conjugating enzyme 203.7e-3251.75Show/hide
Query:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK
        M  +N Y  NT    P  +  KQ + P KT DSQSVLKRLQ                                SKDT+FEGTEYRLS S  N+YPFKPPK
Subjt:  MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPPK

Query:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        VKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  VKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

AT3G08700.1 ubiquitin-conjugating enzyme 125.6e-1242.65Show/hide
Query:  DTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        D+ + G  + +S    ++YPFKPPKV F+T  +HPN+D   +ICLDIL+++WS A  T   L  + +L
Subjt:  DTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

AT3G20060.1 ubiquitin-conjugating enzyme191.1e-3151.39Show/hide
Query:  MVVINRYTNNTTPA-NPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPP
        M  +N YT NT  A  P  +  KQ +PP KT DS SVLKRLQ                                SKDT+FEGTEYRLS +  N+YPFK P
Subjt:  MVVINRYTNNTTPA-NPVVSQVKQYSPPAKTADSQSVLKRLQ--------------------------------SKDTLFEGTEYRLSFSLPNNYPFKPP

Query:  KVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        KVKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  KVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

AT3G20060.2 ubiquitin-conjugating enzyme198.9e-2672.86Show/hide
Query:  SKDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL
        SKDT+FEGTEYRLS +  N+YPFK PKVKFET CFHPNVD+Y NICLDILQDKWSSA D +T L  +++L
Subjt:  SKDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRNL

AT5G50870.1 ubiquitin-conjugating enzyme 277.3e-1244.12Show/hide
Query:  TLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSN-ICLDILQDKWSSASDTKTNLFLVRNL
        T +EG  +++  ++P+ YPF+PPK++F T  +HPN+   S  ICLDIL+D+WS A   KT L  ++ L
Subjt:  TLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSN-ICLDILQDKWSSASDTKTNLFLVRNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGATCAATCGATATACTAACAACACAACCCCGGCTAACCCAGTTGTTTCTCAAGTAAAGCAATACTCGCCACCAGCCAAAACTGCCGACTCTCAGTCCGTTCT
CAAGAGGCTACAAAGCAAAGACACATTGTTTGAAGGAACAGAGTATAGGTTATCCTTTTCACTCCCTAATAATTACCCTTTTAAGCCCCCAAAGGTGAAGTTTGAGACTA
GCTGCTTTCACCCAAATGTGGACATTTATAGCAATATTTGCTTGGATATACTTCAGGATAAATGGTCATCGGCATCTGATACAAAGACAAATTTGTTTTTGGTTAGAAAC
TTGGATTGCCAATGTTCCTTTAAAAGATTTCGGTTGTTCAGCATAGCTTGTTTTCTCAATTGTTCGGTTTTTATCATTGGGATGGCATTCTCATTCTTGGAACATCATCT
TCTGAAGATTGCTCAAAGCAGTGTTTTCAAGGCCTGTTTTCTCAATTGTTCAGTTTTTATCATTGGGATGGCATTCTCGATCTTGGAACATCATCCTCTGAAGATTGCTC
AAAGTAGTGTTTTCAAGGCGCAAGGCCCACCTCAAGGCGACTTGTCCATTAATCGCCTCAAGGCGAGAGGTGACGAAAAGGCGACACTCAAGCGAAGCGCGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGATCAATCGATATACTAACAACACAACCCCGGCTAACCCAGTTGTTTCTCAAGTAAAGCAATACTCGCCACCAGCCAAAACTGCCGACTCTCAGTCCGTTCT
CAAGAGGCTACAAAGCAAAGACACATTGTTTGAAGGAACAGAGTATAGGTTATCCTTTTCACTCCCTAATAATTACCCTTTTAAGCCCCCAAAGGTGAAGTTTGAGACTA
GCTGCTTTCACCCAAATGTGGACATTTATAGCAATATTTGCTTGGATATACTTCAGGATAAATGGTCATCGGCATCTGATACAAAGACAAATTTGTTTTTGGTTAGAAAC
TTGGATTGCCAATGTTCCTTTAAAAGATTTCGGTTGTTCAGCATAGCTTGTTTTCTCAATTGTTCGGTTTTTATCATTGGGATGGCATTCTCATTCTTGGAACATCATCT
TCTGAAGATTGCTCAAAGCAGTGTTTTCAAGGCCTGTTTTCTCAATTGTTCAGTTTTTATCATTGGGATGGCATTCTCGATCTTGGAACATCATCCTCTGAAGATTGCTC
AAAGTAGTGTTTTCAAGGCGCAAGGCCCACCTCAAGGCGACTTGTCCATTAATCGCCTCAAGGCGAGAGGTGACGAAAAGGCGACACTCAAGCGAAGCGCGCAATGA
Protein sequenceShow/hide protein sequence
MVVINRYTNNTTPANPVVSQVKQYSPPAKTADSQSVLKRLQSKDTLFEGTEYRLSFSLPNNYPFKPPKVKFETSCFHPNVDIYSNICLDILQDKWSSASDTKTNLFLVRN
LDCQCSFKRFRLFSIACFLNCSVFIIGMAFSFLEHHLLKIAQSSVFKACFLNCSVFIIGMAFSILEHHPLKIAQSSVFKAQGPPQGDLSINRLKARGDEKATLKRSAQ