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Clc03G00540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G00540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description6,7-dimethyl-8-ribityllumazine synthase
Genome locationClcChr03:401948..402681
RNA-Seq ExpressionClc03G00540
SyntenyClc03G00540
Gene Ontology termsNA
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036509.1 uncharacterized protein E6C27_scaffold6629G00010 [Cucumis melo var. makuwa]3.3e-6987.66Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPAD-SDHR-KAAKKPTS
        MGN+L+HCLGCILPCGALDLIRVVHLNG VQEFSPPLAA+EIL ANPGHVLTTPSSDDHRLVRRV ILSPESHLRRGGIYFLIPAD SDHR K AKK +S
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPAD-SDHR-KAAKKPTS

Query:  AISGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        A+S GGVFPES+DLS R EDV VLK+ KPSRRDRRRSRSYGGAWQPHLHSISED
Subjt:  AISGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

XP_011658739.1 uncharacterized protein LOC105436080 [Cucumis sativus]1.6e-6078.85Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPAD-SDH---RKAAKKP
        MGN+L+HCLGCILPCGALDLIRVVHLNG VQEFSPPL A++IL ANPGH+LTTPSS DHRLVRRV ILSP+SHLRRGGIYFLIPAD SDH   +  AKK 
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPAD-SDH---RKAAKKP

Query:  TSAISGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        +SA+SG GVFPES       EDV VLK+ KP RRDRRRSRSYGGAWQPHLHSISED
Subjt:  TSAISGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

XP_022964962.1 uncharacterized protein LOC111464913 [Cucurbita moschata]3.5e-6378.95Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI
        MGN+LRHCLGC+LPCGALDLIRVVHLNGHVQEFSPP+AA+EIL ANPGHVLTTPS D H LVR VTILSPESHLRRGGIYFLIPA SDHRKAAK P+SA 
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI

Query:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        S   VFPE  DL+ R EDV V K+AKP RRDRR SR+  GAW+PHL SI+ED
Subjt:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

XP_022970467.1 uncharacterized protein LOC111469438 [Cucurbita maxima]5.9e-6378.95Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI
        MGN+LRHCLGC+LPCGALDLIRVVHLNGHVQEFSPP+AA+EIL ANPGHVLTTPS D H LVR VTILSPES+LRRGGIYFLIPA SDHRKAAKKP+SA 
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI

Query:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        S   VFPE  DL+ R EDV V K+AKP RRDRR SR+  GAW+PHL SI+ED
Subjt:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

XP_038895775.1 uncharacterized protein LOC120083938 [Benincasa hispida]3.5e-7188.82Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI
        MGN+LR+CLGCILPCGALDLIRVVHLNGHVQEFSPPL+A+EILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKP    
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI

Query:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        SG GVFPES+DLS   EDV VLK+AKPSRRDRRRSRSYGG W+PHLHSISED
Subjt:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

TrEMBL top hitse value%identityAlignment
A0A0A0LYB2 Uncharacterized protein7.8e-6178.85Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPAD-SDH---RKAAKKP
        MGN+L+HCLGCILPCGALDLIRVVHLNG VQEFSPPL A++IL ANPGH+LTTPSS DHRLVRRV ILSP+SHLRRGGIYFLIPAD SDH   +  AKK 
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPAD-SDH---RKAAKKP

Query:  TSAISGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        +SA+SG GVFPES       EDV VLK+ KP RRDRRRSRSYGGAWQPHLHSISED
Subjt:  TSAISGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

A0A5A7T586 Uncharacterized protein1.6e-6987.66Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPAD-SDHR-KAAKKPTS
        MGN+L+HCLGCILPCGALDLIRVVHLNG VQEFSPPLAA+EIL ANPGHVLTTPSSDDHRLVRRV ILSPESHLRRGGIYFLIPAD SDHR K AKK +S
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPAD-SDHR-KAAKKPTS

Query:  AISGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        A+S GGVFPES+DLS R EDV VLK+ KPSRRDRRRSRSYGGAWQPHLHSISED
Subjt:  AISGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

A0A6J1GBI2 uncharacterized protein LOC1114526643.5e-5371.71Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI
        MGN+L HCLGC+LPCGALDLIRVVHLNGHVQ FSPPL A EIL++NPGHVLTTPSSDDH L+RR T+LSP+SHLRRG IYFLIPA SDHRK  K  +S  
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI

Query:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        S    FP+S        DV VLK+ K   R+RRRSRS GGAWQPHLHSISED
Subjt:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

A0A6J1HJ26 uncharacterized protein LOC1114649131.7e-6378.95Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI
        MGN+LRHCLGC+LPCGALDLIRVVHLNGHVQEFSPP+AA+EIL ANPGHVLTTPS D H LVR VTILSPESHLRRGGIYFLIPA SDHRKAAK P+SA 
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI

Query:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        S   VFPE  DL+ R EDV V K+AKP RRDRR SR+  GAW+PHL SI+ED
Subjt:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

A0A6J1HZ69 uncharacterized protein LOC1114694382.9e-6378.95Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI
        MGN+LRHCLGC+LPCGALDLIRVVHLNGHVQEFSPP+AA+EIL ANPGHVLTTPS D H LVR VTILSPES+LRRGGIYFLIPA SDHRKAAKKP+SA 
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI

Query:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED
        S   VFPE  DL+ R EDV V K+AKP RRDRR SR+  GAW+PHL SI+ED
Subjt:  SGGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06980.1 unknown protein1.1e-3046.75Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIP-----------ADSDH
        MGN+LR CL C+LPCGALDLIR+VHLNG+V+E +  + A EIL ANP HVL+ P S    +VR++ ILSPES L+RG IYFLIP            D+  
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIP-----------ADSDH

Query:  RKAAKKPTSAISGGGVFPESED---LSQRF--EDVTVLKEAKPSRRDRRRSRSYG-GAWQPHLHSISED
        RK   +  SA + G      E+   L +++  E V+     K  R  RR SRS     W+P L SISED
Subjt:  RKAAKKPTSAISGGGVFPESED---LSQRF--EDVTVLKEAKPSRRDRRRSRSYG-GAWQPHLHSISED

AT1G29195.1 unknown protein1.5e-2436.6Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSS--DDHR-----LVRRVTILSPESHLRRGGIYFLIPAD-------
        M  T+R C+ CILPCGALD+IR+VH NGHV+E S  + ASEI+ A+P HVL  PSS   DH         ++ I+ PE+ L+RG IYFL+PA        
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSS--DDHR-----LVRRVTILSPESHLRRGGIYFLIPAD-------

Query:  ------------------SDHRKAAKKPTSAISGGGVFPESEDLSQRFED-----------VTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISE
                          S +R+  +      +GG    ES D+  +  +             +L E   +++DRR+ R   G W+PHL SISE
Subjt:  ------------------SDHRKAAKKPTSAISGGGVFPESEDLSQRFED-----------VTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISE

AT2G30230.1 unknown protein2.2e-3145.2Show/hide
Query:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI
        MGN+LR CL C+LPCGALDLIR+VHLNGHV E + P+ A EIL ANP HVL+ P S    +VR++ ILSPES L+RG IYFLIP  S   K   K    +
Subjt:  MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAI

Query:  --------SGGGVFPE----SEDL--------SQRFEDVTVLKE----AKPSRRDRRRSRSYG-GAWQPHLHSISED
                SG  +  +    ++DL         +  EDV + ++     K +R  R+ SRS     W+PHL SI+ED
Subjt:  --------SGGGVFPE----SEDL--------SQRFEDVTVLKE----AKPSRRDRRRSRSYG-GAWQPHLHSISED

AT5G50090.1 unknown protein6.4e-0729.75Show/hide
Query:  CGALDLIRVV--HLNGHVQEFSPPLAASEILHANPGH---------VLTTPSSDDHRLVR--RVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAIS
        C A+D  RVV  H NG  ++ S P++AS ++  NPGH          L++ SS     +R  R+ +L P   L  G +Y LI      +    K  S + 
Subjt:  CGALDLIRVV--HLNGHVQEFSPPLAASEILHANPGH---------VLTTPSSDDHRLVR--RVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAIS

Query:  GGGVFPESEDLSQRFEDVTVLKEAK--------PSRRDRRRSRSYGGAWQPHLHSISE
              ES+    + E V  +   K          ++++ RSR    +WQP L SISE
Subjt:  GGGVFPESEDLSQRFEDVTVLKEAK--------PSRRDRRRSRSYGGAWQPHLHSISE

AT5G50090.2 unknown protein1.2e-0831.13Show/hide
Query:  CGALDLIRVV--HLNGHVQEFSPPLAASEILHANPGH---------VLTTPSSDDHRLVR--RVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAIS
        C A+D  RVV  H NG  ++ S P++AS ++  NPGH          L++ SS     +R  R+ +L P   L  G +Y LI      +    K  S + 
Subjt:  CGALDLIRVV--HLNGHVQEFSPPLAASEILHANPGH---------VLTTPSSDDHRLVR--RVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAIS

Query:  GGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRS-YGGAWQPHLHSISE
              ES+    + E V  +   K    D+ + RS    +WQP L SISE
Subjt:  GGGVFPESEDLSQRFEDVTVLKEAKPSRRDRRRSRS-YGGAWQPHLHSISE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAATACTTTAAGGCATTGTTTAGGTTGTATTCTTCCTTGTGGAGCTTTGGACTTAATCAGAGTGGTTCATCTCAACGGCCATGTCCAAGAATTCTCACCGCCGCT
CGCCGCCTCCGAGATCCTCCACGCCAATCCCGGCCACGTCCTCACCACTCCCTCCTCCGACGACCACCGCCTCGTCCGTCGTGTCACCATTCTCTCTCCCGAATCTCACC
TCCGACGAGGCGGCATTTATTTCTTGATTCCGGCTGATTCCGACCATCGGAAGGCTGCTAAAAAGCCAACCTCCGCCATCTCCGGCGGCGGCGTTTTCCCCGAATCTGAA
GATCTCAGTCAACGGTTCGAGGATGTCACTGTCTTGAAGGAGGCTAAACCCAGCCGCCGAGATCGCCGGAGAAGCCGCAGCTACGGCGGCGCGTGGCAGCCTCACTTACA
CAGCATTAGTGAAGATTAA
mRNA sequenceShow/hide mRNA sequence
TCGTACTTTCAATTCCCACAGCCTTTGCTTTTGATTATTCTTTCTTTTTGTGTTTATTTATAAATCTCATCTTTTTTTCCTCTTTCTTTCCCCCTTCATAATTTTCAGTT
TTTTTCAATTCTTCATTGAGAGAGCTTGAATTGGAAAACGGTGTCGTTTTCAAATGGGTAATACTTTAAGGCATTGTTTAGGTTGTATTCTTCCTTGTGGAGCTTTGGAC
TTAATCAGAGTGGTTCATCTCAACGGCCATGTCCAAGAATTCTCACCGCCGCTCGCCGCCTCCGAGATCCTCCACGCCAATCCCGGCCACGTCCTCACCACTCCCTCCTC
CGACGACCACCGCCTCGTCCGTCGTGTCACCATTCTCTCTCCCGAATCTCACCTCCGACGAGGCGGCATTTATTTCTTGATTCCGGCTGATTCCGACCATCGGAAGGCTG
CTAAAAAGCCAACCTCCGCCATCTCCGGCGGCGGCGTTTTCCCCGAATCTGAAGATCTCAGTCAACGGTTCGAGGATGTCACTGTCTTGAAGGAGGCTAAACCCAGCCGC
CGAGATCGCCGGAGAAGCCGCAGCTACGGCGGCGCGTGGCAGCCTCACTTACACAGCATTAGTGAAGATTAATTAATACCCAAAACACCCTCCTCTTATCGACATCGATT
TTTTTCTTTAACTAAAAAAATTATATGTCGTAATTCTTGTGATATTGTCCCTATTTTTTTTTTTTTAAAAAAAA
Protein sequenceShow/hide protein sequence
MGNTLRHCLGCILPCGALDLIRVVHLNGHVQEFSPPLAASEILHANPGHVLTTPSSDDHRLVRRVTILSPESHLRRGGIYFLIPADSDHRKAAKKPTSAISGGGVFPESE
DLSQRFEDVTVLKEAKPSRRDRRRSRSYGGAWQPHLHSISED