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Clc03G00700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G00700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionextensin-like isoform X2
Genome locationClcChr03:611139..611997
RNA-Seq ExpressionClc03G00700
SyntenyClc03G00700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607314.1 hypothetical protein SDJN03_00656, partial [Cucurbita argyrosperma subsp. sororia]8.0e-1244.29Show/hide
Query:  FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGAN-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMIND
        F  CL L  LLSF LV+ AR+ S+  KQ T IV+NDY+DPG N       P+  P  PP     +INDY+DPG N       P+  P  PP     +IND
Subjt:  FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGAN-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMIND

Query:  YGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP
        Y DPG NP  +P  P   PP P  FE  V N   D   NP
Subjt:  YGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP

XP_022948580.1 extensin-like isoform X1 [Cucurbita moschata]6.2e-1242.96Show/hide
Query:  FNPCLTLFLLLSFVLVTLARLHSE----KQNTPIVLNDYADPGANPRHDPNQP-----------PMMINDYADPGAN-------PRHDPNQPP----MMI
        F  CL L  LLSF LV+ AR+ S+    KQ T IV+NDY+DPG NP   P  P           P  INDY+DPG N       P+  P  PP     +I
Subjt:  FNPCLTLFLLLSFVLVTLARLHSE----KQNTPIVLNDYADPGANPRHDPNQP-----------PMMINDYADPGAN-------PRHDPNQPP----MMI

Query:  NDYGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP
        NDY DPG NP  +P  P   PP P  F+  V N   D   NP
Subjt:  NDYGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP

XP_022948581.1 extensin-like isoform X2 [Cucurbita moschata]3.6e-1243.57Show/hide
Query:  FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGANPRHDPNQP-----------PMMINDYADPGAN-------PRHDPNQPP----MMIND
        F  CL L  LLSF LV+ AR+ S+  KQ T IV+NDY+DPG NP   P  P           P  INDY+DPG N       P+  P  PP     +IND
Subjt:  FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGANPRHDPNQP-----------PMMINDYADPGAN-------PRHDPNQPP----MMIND

Query:  YGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP
        Y DPG NP  +P  P   PP P  F+  V N   D   NP
Subjt:  YGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP

XP_023525723.1 extensin-like isoform X2 [Cucurbita pepo subsp. pepo]3.1e-1142.86Show/hide
Query:  FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGAN-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMIND
        F  CL L  LLSFVLV  AR+ S+  KQ T IV+NDY+DPG N       P+  P  PP     ++NDY+DPG N       P+  P  PP     ++ND
Subjt:  FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGAN-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMIND

Query:  YGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP
        Y DPG NP  +P  P   PP P  F+  V N   D   NP
Subjt:  YGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP

XP_038895781.1 circumsporozoite protein-like [Benincasa hispida]6.1e-3677.45Show/hide
Query:  MDCFNPCLTLFLLLSFVLVTLARL--HSEKQNTPIVLNDYADPGANPRHDPNQPPMMINDYADPGANPRHDPNQPPMMINDYGDPGANPRHNPNQPPPPL
        M+ F   LT FLLLSF L+TLAR+  HSE QN  I +NDYADPGANPRHDPNQPPMMINDYADPGANPRHDPNQ PMMINDY DPGANPRH+PNQPP  +
Subjt:  MDCFNPCLTLFLLLSFVLVTLARL--HSEKQNTPIVLNDYADPGANPRHDPNQPPMMINDYADPGANPRHDPNQPPMMINDYGDPGANPRHNPNQPPPPL

Query:  PR
         R
Subjt:  PR

TrEMBL top hitse value%identityAlignment
A0A0E0DTA0 Uncharacterized protein2.5e-1143.16Show/hide
Query:  TPIVLNDYADPGANPRHDPNQPP---------------MMINDYADPGANPRHDPNQPP---------------MMINDYGDPGANPRHNPNQPP
        T + +NDY  PGANPRH+P +PP               + +NDY  PGANPRH+P +PP               + +NDY  PGANPRHNP +PP
Subjt:  TPIVLNDYADPGANPRHDPNQPP---------------MMINDYADPGANPRHDPNQPP---------------MMINDYGDPGANPRHNPNQPP

A0A0N7KKZ9 Uncharacterized protein4.3e-1142.71Show/hide
Query:  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP---------------MMINDYGDPGANPRHNPNQPP
        T + +NDY  PGANPRH+P +PP                + +NDY  PGANPRH+P  PP               + +NDY  PGANPRHNP +PP
Subjt:  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP---------------MMINDYGDPGANPRHNPNQPP

A0A6J1G9M0 extensin-like isoform X21.7e-1243.57Show/hide
Query:  FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGANPRHDPNQP-----------PMMINDYADPGAN-------PRHDPNQPP----MMIND
        F  CL L  LLSF LV+ AR+ S+  KQ T IV+NDY+DPG NP   P  P           P  INDY+DPG N       P+  P  PP     +IND
Subjt:  FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGANPRHDPNQP-----------PMMINDYADPGAN-------PRHDPNQPP----MMIND

Query:  YGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP
        Y DPG NP  +P  P   PP P  F+  V N   D   NP
Subjt:  YGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP

A0A6J1GAA0 extensin-like isoform X13.0e-1242.96Show/hide
Query:  FNPCLTLFLLLSFVLVTLARLHSE----KQNTPIVLNDYADPGANPRHDPNQP-----------PMMINDYADPGAN-------PRHDPNQPP----MMI
        F  CL L  LLSF LV+ AR+ S+    KQ T IV+NDY+DPG NP   P  P           P  INDY+DPG N       P+  P  PP     +I
Subjt:  FNPCLTLFLLLSFVLVTLARLHSE----KQNTPIVLNDYADPGANPRHDPNQP-----------PMMINDYADPGAN-------PRHDPNQPP----MMI

Query:  NDYGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP
        NDY DPG NP  +P  P   PP P  F+  V N   D   NP
Subjt:  NDYGDPGANPRHNPNQPP--PPLPRRFEVRVAN--RDVSTNP

Q75KZ2 Uncharacterized protein4.3e-1142.71Show/hide
Query:  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP---------------MMINDYGDPGANPRHNPNQPP
        T + +NDY  PGANPRH+P +PP                + +NDY  PGANPRH+P  PP               + +NDY  PGANPRHNP +PP
Subjt:  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP---------------MMINDYGDPGANPRHNPNQPP

SwissProt top hitse value%identityAlignment
P26694 Circumsporozoite protein4.9e-0437.35Show/hide
Query:  NDYADPGANPRHDPNQPPMM---INDYADPGANPRHDPNQPPMMINDYGDPGANPRHNPNQPPPPLPRRFEVRVANRDVSTNP
        N   DP ANP  DPN  P +    N   DP ANP  +PN  P  +N   +P  NP  NPN  P   P        N + + NP
Subjt:  NDYADPGANPRHDPNQPPMM---INDYADPGANPRHDPNQPPMMINDYGDPGANPRHNPNQPPPPLPRRFEVRVANRDVSTNP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGTTTCAATCCTTGCCTTACTCTCTTCCTCTTGCTCTCCTTTGTCCTCGTTACTTTAGCTCGGCTCCATTCAGAAAAACAAAACACACCGATTGTGTTAAATGA
CTATGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAGCCACCAATGATGATAAATGATTATGCTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAACCAC
CAATGATGATAAATGACTATGGTGATCCAGGAGCTAATCCAAGACATAATCCAAATCAGCCGCCCCCACCTCTGCCACGACGGTTTGAGGTTAGAGTTGCCAACAGAGAC
GTTAGCACAAATCCCTAA
mRNA sequenceShow/hide mRNA sequence
TGTATCCCTTTTTTGACTTACAAACTTCATAACTTTCCATCTATTTTCGCTCAACCATTCCTTCAATTTGTCAGTTTCAACAGAATAAAACCTTTCATATATAGTTTTCT
TTCATTTCTCTCTATGTAAATATATGGACTTCTTTCACTTCACATCCCATTACCAATCTTTCAAACAAAGGCAAAAGAAACAATACCATGGATTGTTTCAATCCTTGCCT
TACTCTCTTCCTCTTGCTCTCCTTTGTCCTCGTTACTTTAGCTCGGCTCCATTCAGAAAAACAAAACACACCGATTGTGTTAAATGACTATGCTGATCCAGGAGCTAATC
CAAGACATGATCCAAACCAGCCACCAATGATGATAAATGATTATGCTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAACCACCAATGATGATAAATGACTATGGT
GATCCAGGAGCTAATCCAAGACATAATCCAAATCAGCCGCCCCCACCTCTGCCACGACGGTTTGAGGTTAGAGTTGCCAACAGAGACGTTAGCACAAATCCCTAAAAAAT
CTAATTGCTACGTGAGAAATACAAACAAAAGAGTTAAACAAAGAATTAATGATACAAATATATGAACAATAATAGTACTATACAAATATTATATTACTGATGTAAATAAT
TTGATTTGTGTGTTGAGAGTGGAACAATATGTATTATGAATGTAATGAATGAACAAACATAGTATATGGTAATGAACAAGAATCGAATTTTTGTTCTCCCTCTAA
Protein sequenceShow/hide protein sequence
MDCFNPCLTLFLLLSFVLVTLARLHSEKQNTPIVLNDYADPGANPRHDPNQPPMMINDYADPGANPRHDPNQPPMMINDYGDPGANPRHNPNQPPPPLPRRFEVRVANRD
VSTNP