; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc03G01060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G01060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSerine/arginine-rich splicing factor SR45a-like
Genome locationClcChr03:945825..946603
RNA-Seq ExpressionClc03G01060
SyntenyClc03G01060
Gene Ontology termsGO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031790.1 serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]2.7e-5398.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

TYJ97341.1 serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]6.0e-5397.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

XP_004145262.1 serine/arginine-rich splicing factor SR45a [Cucumis sativus]2.7e-5398.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

XP_008457405.1 PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]6.0e-5397.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

XP_022970546.1 serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita maxima]1.0e-5294.96Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADP TRESRGFGFITMSS +EAE CI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEKFF
        KYLNRSVLEGRIITVEKFF
Subjt:  KYLNRSVLEGRIITVEKFF

TrEMBL top hitse value%identityAlignment
A0A0A0LXJ6 RRM domain-containing protein1.3e-5398.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A1S3C508 serine/arginine-rich splicing factor SR45a-like2.9e-5397.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A5A7SM07 Serine/arginine-rich splicing factor SR45a-like1.3e-5398.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A5D3BFE7 Serine/arginine-rich splicing factor SR45a-like2.9e-5397.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A6J1I0W1 serine/arginine-rich splicing factor SR45a-like isoform X45.0e-5394.96Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADP TRESRGFGFITMSS +EAE CI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEKFF
        KYLNRSVLEGRIITVEKFF
Subjt:  KYLNRSVLEGRIITVEKFF

SwissProt top hitse value%identityAlignment
Q10422 Uncharacterized RNA-binding protein C25G10.018.3e-1336.73Show/hide
Query:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK
        + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T+ SRGFGF++ S+++EA + I  LN     GR++ V+K
Subjt:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK

Q14151 Scaffold attachment factor B27.8e-1142.86Show/hide
Query:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK
        G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS+ DEA  CI +L+R+ L GR+I+VEK
Subjt:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK

Q39061 RNA-binding protein CP33, chloroplastic4.5e-1147.22Show/hide
Query:  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITV
        LYV  L   IT  EL + F   GTV+DV +V D +T  SRGFGF+TM SI+EA+  ++  N S + GR + V
Subjt:  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITV

Q80YR5 Scaffold attachment factor B23.5e-1142.86Show/hide
Query:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK
        G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS+ DEA  CI +L+R+ L GR+I+VEK
Subjt:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK

Q84TH4 Serine/arginine-rich splicing factor SR45a1.1e-3367.5Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAE

Query:  NCIKYLNRSVLEGRIITVEK
         CI+ L+ SVL+GR+ITVEK
Subjt:  NCIKYLNRSVLEGRIITVEK

Arabidopsis top hitse value%identityAlignment
AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.9e-3567.5Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAE

Query:  NCIKYLNRSVLEGRIITVEK
         CI+ L+ SVL+GR+ITVEK
Subjt:  NCIKYLNRSVLEGRIITVEK

AT1G07350.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-3967.44Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAE

Query:  NCIKYLNRSVLEGRIITVEKFFWQQVSCM
         CI+ L+ SVL+GR+ITVEKF WQQV C+
Subjt:  NCIKYLNRSVLEGRIITVEKFFWQQVSCM

AT4G35785.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-3062.93Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIK
        S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CIK
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIK

Query:  YLNRSVLEGRIITVEK
        YLN+SVLEGR ITVE+
Subjt:  YLNRSVLEGRIITVEK

AT4G35785.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.0e-2962.39Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEK
        KYLN+SVLEGR ITVE+
Subjt:  KYLNRSVLEGRIITVEK

AT4G35785.3 RNA-binding (RRM/RBD/RNP motifs) family protein3.8e-2959.68Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI

Query:  KYLNRSVLEGRIITVEKFFWQQVS
        KYLN+SVLEGR ITVE+    Q +
Subjt:  KYLNRSVLEGRIITVEKFFWQQVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGT
GACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGAT
GTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGA
TCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGTTTTTTTGGCAGCAGGTTAGCTGTATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGT
GACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGAT
GTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGA
TCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGTTTTTTTGGCAGCAGGTTAGCTGTATGTAG
Protein sequenceShow/hide protein sequence
MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNR
SVLEGRIITVEKFFWQQVSCM