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Clc03G01680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G01680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type domain-containing protein
Genome locationClcChr03:1419553..1420002
RNA-Seq ExpressionClc03G01680
SyntenyClc03G01680
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067735.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa]1.7e-3854.88Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS
        MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    +S +     LPA RE       +IV+IEAMVFSY+E + S
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS

Query:  EN------DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        EN      DDYECVICLN+F++ QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Subjt:  EN------DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

XP_004151032.1 RING-H2 finger protein ATL66 [Cucumis sativus]2.2e-3857.89Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESE-SAIAAAGPLPALREPKIVKIEAMVFS-YKEGRGSEN-DDYE
        MS PP++AASP P       FE   +D  L   + F  II+YF++F++Y+KT NNESE         LP  RE +IV+IE MVFS Y+E +GSEN DDYE
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESE-SAIAAAGPLPALREPKIVKIEAMVFS-YKEGRGSEN-DDYE

Query:  CVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        CVICLN+F++GQKC+ MKKCGH FH SCIDRWL  E++CPLCRSCVCVV+ P
Subjt:  CVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

XP_008457571.1 PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo]1.3e-3855.21Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS
        MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    +S +     LPA RE       +IV+IEAMVFSY+E + S
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS

Query:  EN-----DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        EN     DDYECVICLN+F++ QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Subjt:  EN-----DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]2.6e-3453.69Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVI
        M  PP  AASP PI  +  T+ L   +  LA+  I  LIILY I  +++     +E ES    AG LP +REP+IV+IEA VFSY+E  G  +D  EC I
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVI

Query:  CLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        CL++F++GQKCR M KCGH FHR CIDRWL V++ CPLCRSCVCVV+ P
Subjt:  CLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]6.7e-3555.03Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVI
        M SPP  AASP PI  +  T+ L   +  LAV  I  LIILY I  +++     +E ES    AG LP +REP+IV+IEA VFSYKE  G  +D  EC I
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVI

Query:  CLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        CL++F++ QKCR M KCGH FHR CIDRWL V++ CPLCRSCVCVV+ P
Subjt:  CLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

TrEMBL top hitse value%identityAlignment
A0A0A0LXE1 RING-type domain-containing protein1.1e-3857.89Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESE-SAIAAAGPLPALREPKIVKIEAMVFS-YKEGRGSEN-DDYE
        MS PP++AASP P       FE   +D  L   + F  II+YF++F++Y+KT NNESE         LP  RE +IV+IE MVFS Y+E +GSEN DDYE
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESE-SAIAAAGPLPALREPKIVKIEAMVFS-YKEGRGSEN-DDYE

Query:  CVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        CVICLN+F++GQKC+ MKKCGH FH SCIDRWL  E++CPLCRSCVCVV+ P
Subjt:  CVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

A0A1S3C6H7 RING-H2 finger protein ATL66-like6.3e-3955.21Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS
        MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    +S +     LPA RE       +IV+IEAMVFSY+E + S
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS

Query:  EN-----DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        EN     DDYECVICLN+F++ QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Subjt:  EN-----DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

A0A5A7VPW6 RING-H2 finger protein ATL66-like8.3e-3954.88Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS
        MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    +S +     LPA RE       +IV+IEAMVFSY+E + S
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS

Query:  EN------DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        EN      DDYECVICLN+F++ QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Subjt:  EN------DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

A0A5D3BGV5 RING-H2 finger protein ATL66-like6.3e-3955.21Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS
        MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    +S +     LPA RE       +IV+IEAMVFSY+E + S
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---SESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGS

Query:  EN-----DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        EN     DDYECVICLN+F++ QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Subjt:  EN-----DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

A0A6J1KAT3 RING-type E3 ubiquitin transferase1.2e-3453.69Show/hide
Query:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVI
        M  PP  AASP PI  +  T+ L   +  LA+  I  LIILY I  +++     +E ES    AG LP +REP+IV+IEA VFSY+E  G  +D  EC I
Subjt:  MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVI

Query:  CLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        CL++F++GQKCR M KCGH FHR CIDRWL V++ CPLCRSCVCVV+ P
Subjt:  CLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

SwissProt top hitse value%identityAlignment
Q8GW38 RING-H2 finger protein ATL477.0e-1147.46Show/hide
Query:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCR
        VF YKE +G++ + ++C +CL +F E  K RL+  C H FH  CID WL+    CPLCR
Subjt:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCR

Q9LF64 RING-H2 finger protein ATL524.1e-1145.59Show/hide
Query:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        V+ YK G G   D  +C +CL++F+E +  RL+ KC H FH  CID WL     CPLCR+ V  V  P
Subjt:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

Q9LX93 E3 ubiquitin-protein ligase RING11.3e-1245.59Show/hide
Query:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        V  +K+G G   D  EC +CLN+F+E +  RL+ KC H FH +CID WL+  + CPLCR+ V ++ +P
Subjt:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

Q9M0R7 RING-H2 finger protein ATL396.4e-1235.54Show/hide
Query:  TVIFTLIILYFIAF---SYYY-KTRNNESESAIAAAGPLPALREPKIVKIEAM----VFSYKEGRGSEN--DDYECVICLNQFKEGQKCRLMKKCGHRFH
        T++F    + FIAF   +YY  + RN  + +       +   R P+ +  EA+     F Y E RG E    + ECV+CLN+FK+ +  RL+  C H FH
Subjt:  TVIFTLIILYFIAF---SYYY-KTRNNESESAIAAAGPLPALREPKIVKIEAM----VFSYKEGRGSEN--DDYECVICLNQFKEGQKCRLMKKCGHRFH

Query:  RSCIDRWLMVEQQCPLCRSCV
          C+D WL     CP+CR+ V
Subjt:  RSCIDRWLMVEQQCPLCRSCV

Q9SJJ7 RING-H2 finger protein ATL573.2e-1128.47Show/hide
Query:  DKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALR----EPKIVKIEAMV---FSYKEG---------------RGSENDDYECVICLNQ
        D  +A+T+   L+ L+F+ F   Y     +S S+      +P  R     P+ +    +V   +S++ G               + ++  + +CVICL+ 
Subjt:  DKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALR----EPKIVKIEAMV---FSYKEG---------------RGSENDDYECVICLNQ

Query:  FKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRS
        F+EG+  +++  CGH FH  C+D WL     CPLCRS
Subjt:  FKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRS

Arabidopsis top hitse value%identityAlignment
AT1G23980.1 RING/U-box superfamily protein5.0e-1247.46Show/hide
Query:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCR
        VF YKE +G++ + ++C +CL +F E  K RL+  C H FH  CID WL+    CPLCR
Subjt:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCR

AT2G27940.1 RING/U-box superfamily protein2.2e-1228.47Show/hide
Query:  DKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALR----EPKIVKIEAMV---FSYKEG---------------RGSENDDYECVICLNQ
        D  +A+T+   L+ L+F+ F   Y     +S S+      +P  R     P+ +    +V   +S++ G               + ++  + +CVICL+ 
Subjt:  DKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALR----EPKIVKIEAMV---FSYKEG---------------RGSENDDYECVICLNQ

Query:  FKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRS
        F+EG+  +++  CGH FH  C+D WL     CPLCRS
Subjt:  FKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRS

AT4G09100.1 RING/U-box superfamily protein4.5e-1335.54Show/hide
Query:  TVIFTLIILYFIAF---SYYY-KTRNNESESAIAAAGPLPALREPKIVKIEAM----VFSYKEGRGSEN--DDYECVICLNQFKEGQKCRLMKKCGHRFH
        T++F    + FIAF   +YY  + RN  + +       +   R P+ +  EA+     F Y E RG E    + ECV+CLN+FK+ +  RL+  C H FH
Subjt:  TVIFTLIILYFIAF---SYYY-KTRNNESESAIAAAGPLPALREPKIVKIEAM----VFSYKEGRGSEN--DDYECVICLNQFKEGQKCRLMKKCGHRFH

Query:  RSCIDRWLMVEQQCPLCRSCV
          C+D WL     CP+CR+ V
Subjt:  RSCIDRWLMVEQQCPLCRSCV

AT5G10380.1 RING/U-box superfamily protein9.1e-1445.59Show/hide
Query:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        V  +K+G G   D  EC +CLN+F+E +  RL+ KC H FH +CID WL+  + CPLCR+ V ++ +P
Subjt:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

AT5G17600.1 RING/U-box superfamily protein2.9e-1245.59Show/hide
Query:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP
        V+ YK G G   D  +C +CL++F+E +  RL+ KC H FH  CID WL     CPLCR+ V  V  P
Subjt:  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCGCCGCCGTTTGTCGCCGCTTCACCGGCACCAATCAGAGTTGTCGCCGCCACTTTTGAACTGACTTTGGAGGATAAGTATTTGGCTGTGACAGTCATTTTCAC
CTTGATTATTCTATACTTCATCGCCTTCAGTTACTACTACAAAACCAGAAATAATGAATCAGAATCCGCCATTGCGGCGGCCGGACCATTGCCGGCGTTGCGGGAGCCGA
AGATTGTAAAGATTGAGGCCATGGTTTTCAGTTACAAGGAAGGTAGGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGAAGGCCAAAAG
TGTCGATTGATGAAAAAGTGTGGCCATAGATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGTGGAACAACAATGCCCGCTTTGTCGGAGCTGCGTTTGCGTCGTTAT
AAAACCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCGCCGCCGTTTGTCGCCGCTTCACCGGCACCAATCAGAGTTGTCGCCGCCACTTTTGAACTGACTTTGGAGGATAAGTATTTGGCTGTGACAGTCATTTTCAC
CTTGATTATTCTATACTTCATCGCCTTCAGTTACTACTACAAAACCAGAAATAATGAATCAGAATCCGCCATTGCGGCGGCCGGACCATTGCCGGCGTTGCGGGAGCCGA
AGATTGTAAAGATTGAGGCCATGGTTTTCAGTTACAAGGAAGGTAGGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGAAGGCCAAAAG
TGTCGATTGATGAAAAAGTGTGGCCATAGATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGTGGAACAACAATGCCCGCTTTGTCGGAGCTGCGTTTGCGTCGTTAT
AAAACCATAA
Protein sequenceShow/hide protein sequence
MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVICLNQFKEGQK
CRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP