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Clc03G01720 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G01720
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptioncyclin-dependent protein kinase inhibitor SMR3-like
Genome locationClcChr03:1457588..1458440
RNA-Seq ExpressionClc03G01720
SyntenyClc03G01720
Gene Ontology termsGO:0032875 - regulation of DNA endoreduplication (biological process)
GO:0045839 - negative regulation of mitotic nuclear division (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR040389 - Cyclin-dependent protein kinase inhibitor SMR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8039043.1 hypothetical protein FH972_011491 [Carpinus fangiana]6.8e-2251.03Show/hide
Query:  MGLFNSSILLSENDVNAMEFTFLL------------TYVNSKEEEEEEKN-------------GSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPK
        MG+ +S + LSE D+NAMEF FL+              V  +EEEEEE+N             G    VEDD++GFKTPTSL+HKIP  L+CP APRKPK
Subjt:  MGLFNSSILLSENDVNAMEFTFLL------------TYVNSKEEEEEEKN-------------GSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPK

Query:  PRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLG-GKIKRIRQ
          PL KRKAA R R+LLDLS++I++LFP   L  L  GKIK+IR+
Subjt:  PRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLG-GKIKRIRQ

KAG6607237.1 hypothetical protein SDJN03_00579, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3879.46Show/hide
Query:  MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQS
        M LFNS+ILLSENDV+AMEFTFLLTY+ SK ++ +  + S   VEDDDNGFKTPTSLEHKIP SLRCPMAPRKPK RP+MKRKA ER RL LDLSSEIQS
Subjt:  MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQS

Query:  LFPADFLVGLGG
        LFPADFLVGLGG
Subjt:  LFPADFLVGLGG

KAG7036922.1 hypothetical protein SDJN02_00542, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-4077.78Show/hide
Query:  MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQS
        M LFNS+ILLSENDV+AMEFTFLLTY+ SK ++ +  + S   V+DDDNGFKTPTSLEHKIP SLRCPMAPRKPK RP+MKRKA ER RL LDLSSEIQS
Subjt:  MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQS

Query:  LFPADFLVGLGGKIKRI
        LFPADFLVGLGGK+KR+
Subjt:  LFPADFLVGLGGKIKRI

XP_011658114.1 cyclin-dependent protein kinase inhibitor SMR3 [Cucumis sativus]6.8e-4680.95Show/hide
Query:  MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEE-------KNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLD
        MGLFNSSILLSENDVN+MEFTFLL YVNSKE+++EE         G +  VEDDDNGFKTPTSLEHKIPTSL+CPMAPRKPKPR L KRKA ERHRLLLD
Subjt:  MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEE-------KNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLD

Query:  LSSEIQSLFPADFLVGLGGKIKRIRQ
        LSSEIQSLFPA+FLVGLGGKIKR+RQ
Subjt:  LSSEIQSLFPADFLVGLGGKIKRIRQ

XP_016902107.1 PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo]4.4e-4581.25Show/hide
Query:  MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLL
        MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++EE       NG SN VV+DDDNGFKTPTSLEHKIPTS++CPMAPRKPKPR L KRKA ERHRLL
Subjt:  MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLL

Query:  LDLSSEIQSLFPADFLVGLGGKIKRIRQ
        LDLSSEIQSLFPA+FLVGLGGKIKR+RQ
Subjt:  LDLSSEIQSLFPADFLVGLGGKIKRIRQ

TrEMBL top hitse value%identityAlignment
A0A0A0LY05 Uncharacterized protein3.3e-4680.95Show/hide
Query:  MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEE-------KNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLD
        MGLFNSSILLSENDVN+MEFTFLL YVNSKE+++EE         G +  VEDDDNGFKTPTSLEHKIPTSL+CPMAPRKPKPR L KRKA ERHRLLLD
Subjt:  MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEE-------KNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLD

Query:  LSSEIQSLFPADFLVGLGGKIKRIRQ
        LSSEIQSLFPA+FLVGLGGKIKR+RQ
Subjt:  LSSEIQSLFPADFLVGLGGKIKRIRQ

A0A1S4E1K5 cyclin-dependent protein kinase inhibitor SMR3-like2.1e-4581.25Show/hide
Query:  MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLL
        MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++EE       NG SN VV+DDDNGFKTPTSLEHKIPTS++CPMAPRKPKPR L KRKA ERHRLL
Subjt:  MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLL

Query:  LDLSSEIQSLFPADFLVGLGGKIKRIRQ
        LDLSSEIQSLFPA+FLVGLGGKIKR+RQ
Subjt:  LDLSSEIQSLFPADFLVGLGGKIKRIRQ

A0A2N9ECP2 Uncharacterized protein4.0e-2048Show/hide
Query:  MGLFNSSILLSENDVNAMEFTFLL-----------------TYVNSKEEEEEEKNGSNLVV------------EDDDN-GFKTPTSLEHKIPTSLRCPMA
        MG+ +S   LSE D+NAME  FL+                   V  +++EEEE    N+ V            ED+DN GFKTPTSL+HKIP  L+CP A
Subjt:  MGLFNSSILLSENDVNAMEFTFLL-----------------TYVNSKEEEEEEKNGSNLVV------------EDDDN-GFKTPTSLEHKIPTSLRCPMA

Query:  PRKPKPR--PLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIR
        PRKPKP+  P  KRKA  R R+LLDLS EI+S+FP   LV L GKIK+IR
Subjt:  PRKPKPR--PLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIR

A0A5A7VIY0 Cyclin-dependent protein kinase inhibitor SMR3-like2.1e-4581.25Show/hide
Query:  MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLL
        MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++EE       NG SN VV+DDDNGFKTPTSLEHKIPTS++CPMAPRKPKPR L KRKA ERHRLL
Subjt:  MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLL

Query:  LDLSSEIQSLFPADFLVGLGGKIKRIRQ
        LDLSSEIQSLFPA+FLVGLGGKIKR+RQ
Subjt:  LDLSSEIQSLFPADFLVGLGGKIKRIRQ

A0A660KRH4 Uncharacterized protein3.3e-2251.03Show/hide
Query:  MGLFNSSILLSENDVNAMEFTFLL------------TYVNSKEEEEEEKN-------------GSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPK
        MG+ +S + LSE D+NAMEF FL+              V  +EEEEEE+N             G    VEDD++GFKTPTSL+HKIP  L+CP APRKPK
Subjt:  MGLFNSSILLSENDVNAMEFTFLL------------TYVNSKEEEEEEKN-------------GSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPK

Query:  PRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLG-GKIKRIRQ
          PL KRKAA R R+LLDLS++I++LFP   L  L  GKIK+IR+
Subjt:  PRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLG-GKIKRIRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G02420.1 unknown protein3.1e-0445.31Show/hide
Query:  DDDNGFKTPTSLEHKIP--TSLRCPMAPRKPKPRPL--MKRKAAE---RHRLLLDLSSEIQSLF
        +++ G KTPTS +HKIP      CP APRKPKP      KRK       +R+ +DLS EI+  F
Subjt:  DDDNGFKTPTSLEHKIP--TSLRCPMAPRKPKPRPL--MKRKAAE---RHRLLLDLSSEIQSLF

AT5G59360.1 unknown protein1.1e-0434.21Show/hide
Query:  EDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKA--AERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIR
        +D+++  K P +  +        P  PRKPK  P MKR+    +R  + LD++ E++S+FP   L   G KIK+ R
Subjt:  EDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKA--AERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTAAACGCCATGGAGTTCACTTTTCTTCTTACATACGTCAATTCCAAAGAAGAAGAAGAAGAAGAGAA
AAATGGAAGCAACTTAGTTGTTGAAGATGACGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCGACAAGTCTCCGGTGTCCAATGGCGCCGAGGAAAC
CAAAACCTCGGCCATTGATGAAGCGGAAGGCGGCAGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTT
GGTGGTAAGATCAAGAGGATTAGACAATAA
mRNA sequenceShow/hide mRNA sequence
CTAAAATCCAAAGCATTGAAAAATCACAAGACAAAGAGGAAAGACATGTAGTGGCTTTGATAATTATATATCCCTTTCTTTCAAATCCTTATATTTTTCCCTATTATATA
TCATCATAAATTTCTTCCAACAACACCTCCTCTCTCTCTAAATCTCTCATTTTTTTTTTCTTTTCTTTTTTTTTTTTAAAAAAAAATTTCCATGCACGTATAATTATTTG
AATTGAAAATGGGTCTCTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTAAACGCCATGGAGTTCACTTTTCTTCTTACATACGTCAATTCCAAAGAAGAAGAAGAA
GAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGACGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCGACAAGTCTCCGGTGTCCAATGGCGCC
GAGGAAACCAAAACCTCGGCCATTGATGAAGCGGAAGGCGGCAGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTG
TAGGCCTTGGTGGTAAGATCAAGAGGATTAGACAATAAAGAAACAAAAACTTTGATCTATAACAAAAAATGATGTACTGCTGTTTTCTCCTTTTTTTTCTTTTTTTCTTT
TTTTCCCGTTATTTTTCCCTTTGCTTTTAGATATCAAAATTGATATTGTAGAAATATGGAGTTTCTCTGTTTAGATATGATCTCTCCTCCGGCAGCCGCGAGGTGCAACT
TGTTAGCTTAAAATCTGAATCTTAACATAATATCATAACAAAATTTATGAATGTCTATTTTCTTTCCTTCTTTTCTGTGTCTC
Protein sequenceShow/hide protein sequence
MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGL
GGKIKRIRQ