; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc03G02280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G02280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionYrdC-like domain-containing protein
Genome locationClcChr03:2131797..2137342
RNA-Seq ExpressionClc03G02280
SyntenyClc03G02280
Gene Ontology termsGO:0006450 - regulation of translational fidelity (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0003725 - double-stranded RNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR006070 - YrdC-like domain
IPR017945 - DHBP synthase RibB-like alpha/beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21224.1 yrdC domain-containing protein [Cucumis melo var. makuwa]6.2e-13275.15Show/hide
Query:  MVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKF
        M +SLSLIRTFATFPSSH GS NYG+VSF Q+NRGSR+SF KT WSLEKC M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACT  
Subjt:  MVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKF

Query:  LVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGA--TGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAV
        +                  +G+  R   G  V+R L   W+G+   GR  +V      +   +  S+EAVHRIYEIKGRKLTSPLAICVG VSDITR+A+
Subjt:  LVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGA--TGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAV

Query:  TDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGR
        TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGR
Subjt:  TDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGR

Query:  AGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        AGSTI+DLT+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Subjt:  AGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

XP_004148791.1 yrdC domain-containing protein, mitochondrial isoform X1 [Cucumis sativus]1.6e-13273.78Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
        MNTLPAKM +SLSLIRTF TFPSS  GS NYG+VSF Q+NRGSR+SF KT WSLEKC MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA

Query:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI
        CDAC                                                                  S+EAVHRIYEIKGRKLTSPLAICVGDVSDI
Subjt:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI

Query:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
        TRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
Subjt:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV

Query:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        LPAGRAGSTIIDLT++GT+KI+RAGSA+EQT+ATLERYSLLE AA+I
Subjt:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

XP_008465284.1 PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]3.1e-13172.62Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
        MNTLPAKM +SLSLIRTFATFPSSH GS NYG+VSF Q+NRGSR+SF KT WSLEKC M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA

Query:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI
        CDAC                                                                  S+EAVHRIYEIKGRKLTSPLAICVG VSDI
Subjt:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI

Query:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
        TR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
Subjt:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV

Query:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        LPAGRAGSTI+DLT+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Subjt:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

XP_023521571.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo]3.1e-13174.28Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
        MNTLPAKMVE LSLIRTFATFPSS  G+PNYG VSF   NRGSRL+FPKT WSLEKCSMRVEN LQALRPASEAFAQEAT+ALKAGKVIAVPTDTLYGLA
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA

Query:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI
        CDAC                                                                  SSEAV+RIYEIKGRKLTSPLAICVGDVSDI
Subjt:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI

Query:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
        TRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
Subjt:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV

Query:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS
        LPAGRAGSTIIDLTKRGT+KI+RAGSAKEQTVATL+RYSLLE+A S
Subjt:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS

XP_038893581.1 yrdC domain-containing protein, mitochondrial isoform X1 [Benincasa hispida]3.6e-14078.67Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
        MN LPAKMVESLSLIRTF TFPSSH GSPNYGLVSF QQNRGSR+SFPKTTWSLEKC MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA

Query:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI
        CDAC                                                                  SSEAVHRIYEIKGRKLTSPLAICVGDVSDI
Subjt:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI

Query:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
        TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
Subjt:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV

Query:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        LPAGRAGSTIIDLT+RGTYKILRAGSAKEQTVA LERYSLLEEAASI
Subjt:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

TrEMBL top hitse value%identityAlignment
A0A0A0LUP4 YrdC-like domain-containing protein7.9e-13373.78Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
        MNTLPAKM +SLSLIRTF TFPSS  GS NYG+VSF Q+NRGSR+SF KT WSLEKC MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA

Query:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI
        CDAC                                                                  S+EAVHRIYEIKGRKLTSPLAICVGDVSDI
Subjt:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI

Query:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
        TRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
Subjt:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV

Query:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        LPAGRAGSTIIDLT++GT+KI+RAGSA+EQT+ATLERYSLLE AA+I
Subjt:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

A0A1S3CNI2 yrdC domain-containing protein, mitochondrial1.5e-13172.62Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
        MNTLPAKM +SLSLIRTFATFPSSH GS NYG+VSF Q+NRGSR+SF KT WSLEKC M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA

Query:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI
        CDAC                                                                  S+EAVHRIYEIKGRKLTSPLAICVG VSDI
Subjt:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI

Query:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
        TR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
Subjt:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV

Query:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        LPAGRAGSTI+DLT+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Subjt:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

A0A5A7T5W1 YrdC domain-containing protein1.5e-13172.62Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
        MNTLPAKM +SLSLIRTFATFPSSH GS NYG+VSF Q+NRGSR+SF KT WSLEKC M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA

Query:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI
        CDAC                                                                  S+EAVHRIYEIKGRKLTSPLAICVG VSDI
Subjt:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI

Query:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
        TR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
Subjt:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV

Query:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        LPAGRAGSTI+DLT+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Subjt:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

A0A5D3DCB7 YrdC domain-containing protein3.0e-13275.15Show/hide
Query:  MVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKF
        M +SLSLIRTFATFPSSH GS NYG+VSF Q+NRGSR+SF KT WSLEKC M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACT  
Subjt:  MVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKF

Query:  LVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGA--TGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAV
        +                  +G+  R   G  V+R L   W+G+   GR  +V      +   +  S+EAVHRIYEIKGRKLTSPLAICVG VSDITR+A+
Subjt:  LVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGA--TGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAV

Query:  TDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGR
        TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGR
Subjt:  TDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGR

Query:  AGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        AGSTI+DLT+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Subjt:  AGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

A0A6J1KDV4 yrdC domain-containing protein, mitochondrial9.6e-13173.99Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA
        MNT PAKMVE LSLIRTFATFPSS  G+PNYG VSF   NRGSRL+FPKT WSLEKCSMRVEN LQALRPASEAFAQEAT+ALKAGKVIAVPTDTLYGLA
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLA

Query:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI
        CDAC                                                                  SSEAV+RIYEIKGRKLTSPLAICVGDVSDI
Subjt:  CDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDI

Query:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV
        TRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDADFIRLISRRS TALALTSANLSG+PSSVCVNDFENLWQHCAYVYDGGV
Subjt:  TRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGV

Query:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS
        LPAGRAGSTIIDLTKRG +KI+RAGSAKEQTVATLERYSLLEEA S
Subjt:  LPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS

SwissProt top hitse value%identityAlignment
Q0VC80 YrdC domain-containing protein, mitochondrial3.9e-3635.9Show/hide
Query:  ATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRI
        A   L+AG V+AVPTDTLYGLAC                                                                  S+  SEA+  +
Subjt:  ATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRI

Query:  YEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPS
        Y +KGR  T PLA+C+G V+D+ R+     +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++     LALTSANLS Q S
Subjt:  YEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPS

Query:  SVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS
        S+ V +F++LW H + + DGG +     P  R GST++DL+  G + I+R G A E T A L+ Y LL    S
Subjt:  SVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS

Q3U5F4 YrdC domain-containing protein, mitochondrial6.8e-3334.67Show/hide
Query:  ATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRI
        A   L+AG V+AVPTDTLYGLAC                                                                  S+ SS A+  +
Subjt:  ATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRI

Query:  YEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPS
        Y +KGR    PLA+C+G V+D+ R+     +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++     LALTSANLS Q S
Subjt:  YEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPS

Query:  SVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATL-ERYSLLEEAAS
        S+ V +F++LW H + V DGG +     P  R GST++DL+  G + I+R G A E T + L ++Y LL    S
Subjt:  SVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATL-ERYSLLEEAAS

Q499R4 YrdC domain-containing protein, mitochondrial4.0e-3333.12Show/hide
Query:  GSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTR
        G+RL     + ++E  S       +ALR         A   L+AG V+AVPTDTLYGLAC                                        
Subjt:  GSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTR

Query:  RLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPG
                                  S+  S A+  +Y +KGR    PLA+C+G V+D+ R+     +P  LL+ L PGPVT+V++R E   L K LNP 
Subjt:  RLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPG

Query:  LDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLE
           +G+R+PD  F+  +++     LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G + I+R+G A E T A L+
Subjt:  LDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLE

Query:  -RYSLLEEAAS
         +Y LL    S
Subjt:  -RYSLLEEAAS

Q60369 Putative threonylcarbamoyl-AMP synthase3.4e-1633.94Show/hide
Query:  GRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKR--GEASILEKSLNPGLDSIGVRV
        G+  +  T  L     ++L+ +AV ++Y IK R+   PL+ICV D ++I ++A  + L   ++D  LPGP+T++LK+  G   I+ K      D IG+R+
Subjt:  GRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKR--GEASILEKSLNPGLDSIGVRV

Query:  PDADFIRLISRRSETALALTSANLSGQPSSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIIDL
        PD   IR +   S   L  TSAN+SG+ S   V++ +  + +   YV D G     +  STII +
Subjt:  PDADFIRLISRRSETALALTSANLSGQPSSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIIDL

Q86U90 YrdC domain-containing protein, mitochondrial2.8e-3435.77Show/hide
Query:  ATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRI
        A   L+AG V+AVPTDTLYGLAC A                                                                    S A+  +
Subjt:  ATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRI

Query:  YEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPS
        Y +KGR    PLA+C+G V+D+ R+     +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++  E  LALTSANLS Q S
Subjt:  YEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPS

Query:  SVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATL-ERYSLLEEAAS
        S+ V +F++LW   + V DGG +     P  R GST++DL+  G + I+R G A E T A L ++Y LL   AS
Subjt:  SVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATL-ERYSLLEEAAS

Arabidopsis top hitse value%identityAlignment
AT3G01920.1 DHBP synthase RibB-like alpha/beta domain2.3e-0422.82Show/hide
Query:  ATFPSSHRGSPNYGLVSFFQQNRGSRLSF--PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQEC
        +T PS+   SP   +V+   +    RL +  P+ T   E   + V+ C            Q   D LK G V  +PTDT+Y +ACD             C
Subjt:  ATFPSSHRGSPNYGLVSFFQQNRGSRLSF--PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQEC

Query:  VSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSG----
         +H+                                                     AV R+  IK  + + PL+I    + DI  F  T   P G    
Subjt:  VSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSG----

Query:  ------LLDSLLPGPVTVVLKRGEASILEKSLNPGLDS--------IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCA
               +   LPGP T +L   +  + ++ +  G  S        +GVR+ D    + I ++ +  L  TS  + G   +  + D   +      +   
Subjt:  ------LLDSLLPGPVTVVLKRGEASILEKSLNPGLDS--------IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCA

Query:  YVYDGGVLPAGRAGSTIIDLTKRGTY-KILRAG
        +V DGG+  A    STI+D+T  G Y K++R G
Subjt:  YVYDGGVLPAGRAGSTIIDLTKRGTY-KILRAG

AT5G60590.1 DHBP synthase RibB-like alpha/beta domain2.9e-3140.27Show/hide
Query:  LPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSF-PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACD
        L  ++ E L  I    + P   +G       S   Q+R  R     K  WSLE+    V +    + PA+EA+AQEA +A+K+ KVIAVPTDTLYG ACD
Subjt:  LPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSF-PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACD

Query:  ACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITR
        AC                                                                  S EAV RIYEIKGRKLTSPLAICVGDV DI R
Subjt:  ACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITR

Query:  FAVTDHLPSGLLDSLLPGPVTVVLKR
         A T HLP GLLDSLLPGPVT+VL+R
Subjt:  FAVTDHLPSGLLDSLLPGPVTVVLKR

AT5G60590.2 DHBP synthase RibB-like alpha/beta domain1.1e-8352.2Show/hide
Query:  LPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSF-PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACD
        L  ++ E L  I    + P   +G       S   Q+R  R     K  WSLE+    V +    + PA+EA+AQEA +A+K+ KVIAVPTDTLYG ACD
Subjt:  LPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSF-PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACD

Query:  ACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITR
        AC                                                                  S EAV RIYEIKGRKLTSPLAICVGDV DI R
Subjt:  ACTKFLVRGLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITR

Query:  FAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLP
         A T HLP GLLDSLLPGPVT+VL+RGE+SILEKSLNPG+ +IGVRVPD +FIR +SR S + LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+LP
Subjt:  FAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLP

Query:  AGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEE
        +GRAGSTI+DLTK G YKI+R GSAK+ TVA LE+Y L EE
Subjt:  AGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACCCTTCCGGCGAAAATGGTTGAGAGTCTCTCTTTAATCAGAACCTTTGCGACTTTTCCCTCTTCTCACCGAGGTTCTCCCAATTATGGGCTAGTTTCGTTCTT
CCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAG
CTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTACAAAGTTTTTGGTGAGA
GGTCTTGACCAGGAGTGCGTGTCTCACACTCACTCCCTTGGTTATGATATGGGTGATGATGGTAGGTGCGCGGGTGGTAGTTCTGTTACTAGGCGATTGGTTAGTTTTTG
GATGGGGGCTACTGGAAGAGATCCTTTGGTTTGTACCCTCGTTTTACAAGTTTGTGGAGTATCTTCCCTTTCTTCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGAC
GTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGACGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGG
CCTGTAACTGTTGTACTAAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACT
GATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTT
ATGTATACGACGGTGGCGTTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAG
ACTGTTGCAACACTTGAAAGGTATTCCCTATTAGAAGAAGCAGCTAGCATTTGA
mRNA sequenceShow/hide mRNA sequence
CTCACTGCAAATCTTTTGATTTCAAATCATTCACAATCCCACTTCTCTTTCTTCAAAACCCCGCTAGGGGTTCGCGGGGTTAGCTTCTTGGTCACCACGGTTGCTACAGA
CCTCGACCTCAATGAACACCCTTCCGGCGAAAATGGTTGAGAGTCTCTCTTTAATCAGAACCTTTGCGACTTTTCCCTCTTCTCACCGAGGTTCTCCCAATTATGGGCTA
GTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCC
TGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTACAAAGT
TTTTGGTGAGAGGTCTTGACCAGGAGTGCGTGTCTCACACTCACTCCCTTGGTTATGATATGGGTGATGATGGTAGGTGCGCGGGTGGTAGTTCTGTTACTAGGCGATTG
GTTAGTTTTTGGATGGGGGCTACTGGAAGAGATCCTTTGGTTTGTACCCTCGTTTTACAAGTTTGTGGAGTATCTTCCCTTTCTTCTGAAGCAGTCCATAGGATTTATGA
AATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGACGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTC
TCCTTCCTGGGCCTGTAACTGTTGTACTAAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGAC
TTTATTAGACTGATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCA
ACACTGTGCTTATGTATACGACGGTGGCGTTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTG
CAAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCCCTATTAGAAGAAGCAGCTAGCATTTGAGCATCAGAATCTTGTCTTCTTGTTCATTACATTAGAGGTTGCAAA
GATTTTTTTGGTAGGCTGAGTTAAAGTAGATCAAGTCTAGATTAAGTCTTATGGCTTTACCATTTCATTTTTTTATAACAACTATATTTCCGTTTGTTTATGAAGTTCTT
GTTTTTATTTGTATAATTATGTAACATTTAGATTATTCGTCAAAAATCACTATACTGTATTATGATGAGGAATTCACTAATGCTTGGAATGAGAACTTTCAATTTTGCCT
A
Protein sequenceShow/hide protein sequence
MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKFLVR
GLDQECVSHTHSLGYDMGDDGRCAGGSSVTRRLVSFWMGATGRDPLVCTLVLQVCGVSSLSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPG
PVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQ
TVATLERYSLLEEAASI