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Clc03G03260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G03260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationClcChr03:3349068..3349932
RNA-Seq ExpressionClc03G03260
SyntenyClc03G03260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438871.1 PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]4.4e-5485.19Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRNSRPTPSRFKLEAIR+R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]4.8e-5384.44Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    D  RHLEILKAVAQAWHSHTG+SK A+EFDAHRRNSRP PSRFK+EAIR+R S+VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
XP_022137185.1 uncharacterized protein LOC111008716 [Momordica charantia]1.5e-4679.56Show/hide
Query:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGD
        MKKK E++DD HRHLEILKAVAQAWHSHTGSSK A EFDAHRRN R TPSRFKLEAIR RSS  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD
Subjt:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGD

Query:  GFREADAGG-GRSQRKKRESCNSLRNLFSRASSRRFH
         F E D GG GR QRK  ES NSLRNLF+R SSRRF+
Subjt:  GFREADAGG-GRSQRKKRESCNSLRNLFSRASSRRFH
XP_023001654.1 uncharacterized protein LOC111495727 [Cucurbita maxima]3.1e-4478.2Show/hide
Query:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        MK K+ ++D+   HLEILKAVAQAW SHTG+SK A+EFDAHRRN R  PSRFKLEAIR+RSSV+  RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFR
Subjt:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        EAD GGGR+QRK+RESCNSLRNLF+R +SRRF+
Subjt:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]6.5e-5891.73Show/hide
Query:  MKKKSELQ-DDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        MKKK ELQ DD HRHLEILKAVAQAWHSHTGSSK A+EFDAHRRNSRPTPSRFKLEAIR RSSVSDRRWDF QSLWDSYEIVTVSKKLEAGLVLD DGFR
Subjt:  MKKKSELQ-DDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        E D GGGRSQRKKRESCNSLRNLFSRASSRRF+
Subjt:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein2.3e-5384.44Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    D  RHLEILKAVAQAWHSHTG+SK A+EFDAHRRNSRP PSRFK+EAIR+R S+VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
A0A1S3AX17 uncharacterized protein LOC1034838292.1e-5485.19Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRNSRPTPSRFKLEAIR+R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
A0A5A7UNW1 Uncharacterized protein2.1e-5485.19Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRNSRPTPSRFKLEAIR+R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
A0A6J1C5Z6 uncharacterized protein LOC1110087167.3e-4779.56Show/hide
Query:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGD
        MKKK E++DD HRHLEILKAVAQAWHSHTGSSK A EFDAHRRN R TPSRFKLEAIR RSS  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD
Subjt:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGD

Query:  GFREADAGG-GRSQRKKRESCNSLRNLFSRASSRRFH
         F E D GG GR QRK  ES NSLRNLF+R SSRRF+
Subjt:  GFREADAGG-GRSQRKKRESCNSLRNLFSRASSRRFH
A0A6J1KNC1 uncharacterized protein LOC1114957271.5e-4478.2Show/hide
Query:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        MK K+ ++D+   HLEILKAVAQAW SHTG+SK A+EFDAHRRN R  PSRFKLEAIR+RSSV+  RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFR
Subjt:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        EAD GGGR+QRK+RESCNSLRNLF+R +SRRF+
Subjt:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein7.3e-2346.15Show/hide
Query:  MKKKSELQDDHH-------RHLEILKAVAQAWHSHTGSSK-AATEFDAHRRNS--RPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAG
        M+KK E +D++        + LE++KA AQAW SH+ +SK    EFDA R+++  +   SRFK EA+ A+   S   W+F QSLWD YEI++VSKKLE  
Subjt:  MKKKSELQDDHH-------RHLEILKAVAQAWHSHTGSSK-AATEFDAHRRNS--RPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAG

Query:  LVLDGDGFREADAGGGRSQRKK--RESCNSLRNLFSRASSRRF
        L L+   F  +D  G +  +KK  R+S NSLR+LF+R+SS+RF
Subjt:  LVLDGDGFREADAGGGRSQRKK--RESCNSLRNLFSRASSRRF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAATCAGAGCTTCAAGACGACCACCATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCAGTTCTAAGGCTGCAACTGA
ATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTTCTCGGTTCAAGCTTGAGGCGATTCGAGCCCGGTCTTCCGTCAGCGATCGGAGATGGGACTTCGCCCAGTCGC
TGTGGGACTCGTATGAGATCGTCACGGTTTCCAAGAAGCTGGAGGCTGGGCTGGTGCTCGACGGAGATGGATTTCGGGAGGCCGACGCCGGCGGTGGGCGGAGTCAGAGG
AAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTAA
mRNA sequenceShow/hide mRNA sequence
AACGAATGATCTAAATTTAGAGAGATGAAGAGTGAAGAAGTAGAAGAATAAAAATCAGAGTAGCCAAATGTAAGGTCCATAGTGTTAACTCTTAAAGTACCAAAAATCAA
AACCCATCTCTCTCAGAGAACCCAAATTTGAGGCTGTGATTGGGGCTCATCATAAACATGGCCCCGCCCTCAATTCAATTCCTTAATTCACACACACACTATGAAGAAGA
AATCAGAGCTTCAAGACGACCACCATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCAGTTCTAAGGCTGCAACTGAATTCGACGCC
CATCGCCGGAATTCCAGACCCACTCCTTCTCGGTTCAAGCTTGAGGCGATTCGAGCCCGGTCTTCCGTCAGCGATCGGAGATGGGACTTCGCCCAGTCGCTGTGGGACTC
GTATGAGATCGTCACGGTTTCCAAGAAGCTGGAGGCTGGGCTGGTGCTCGACGGAGATGGATTTCGGGAGGCCGACGCCGGCGGTGGGCGGAGTCAGAGGAAAAAGCGAG
AGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTAACATTAGGGCATTTCAAGTTCGAATTCCAACCGGAATGAAATCCGAAGCTTC
TTGATGATCAATTTTTGAGAATTCGAATCCAGAGGTCTTGATTTTCGTGTTCCGTTTTCGATTTTGAGTAATCAAACTTCCAAATTTTGTGGCTGTTTTCCTTTACATTC
TAGGCTTAGTATACATGATTATATATATATATATATGTTTTTTTTAAGTAATCGTTGCCTTTTCCCGTTTTTAGTAATTTAATCAAAATTGTTAT
Protein sequenceShow/hide protein sequence
MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKAATEFDAHRRNSRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQR
KKRESCNSLRNLFSRASSRRFH