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Clc03G03475 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G03475
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPectinesterase
Genome locationClcChr03:3514512..3515384
RNA-Seq ExpressionClc03G03475
SyntenyClc03G03475
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
GO:0046910 - pectinesterase inhibitor activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055283.1 putative pectinesterase/pectinesterase inhibitor 41 [Cucumis melo var. makuwa]2.0e-1188.1Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        DAI AA DNSNTRFYI VTPGTYHERLQIP +KTFIALIGDN
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

KAA0055287.1 putative pectinesterase/pectinesterase inhibitor 41 [Cucumis melo var. makuwa]2.2e-1382.69Show/hide
Query:  GSIND-----DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        GS+ND      AIAAAPDNSNTRFYIRVTPGTYHERLQIP +KTFIALIGDN
Subjt:  GSIND-----DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

KAA0055288.1 putative pectinesterase/pectinesterase inhibitor 41 [Cucumis melo var. makuwa]8.2e-1378.18Show/hide
Query:  LSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        L  S+ +F +I   AIAAAPDNSNTRFYIRVTPGTYHERLQIP +KTFIALIGDN
Subjt:  LSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

TYJ99206.1 putative pectinesterase/pectinesterase inhibitor 41 [Cucumis melo var. makuwa]5.3e-1285.71Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        DAI AAPDNSNT+FYI VTPGTYHERLQIP +KTF+ALIGDN
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

XP_016903572.1 PREDICTED: probable pectinesterase/pectinesterase inhibitor 40 [Cucumis melo]5.3e-1285.71Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        DAI AAPDNSNT+FYI VTPGTYHERLQIP +KTF+ALIGDN
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

TrEMBL top hitse value%identityAlignment
A0A1S4E5T0 Pectinesterase2.6e-1285.71Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        DAI AAPDNSNT+FYI VTPGTYHERLQIP +KTF+ALIGDN
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

A0A5A7UH51 Pectinesterase9.8e-1288.1Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        DAI AA DNSNTRFYI VTPGTYHERLQIP +KTFIALIGDN
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

A0A5D3BHF7 Pectinesterase1.0e-1382.69Show/hide
Query:  GSIND-----DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        GS+ND      AIAAAPDNSNTRFYIRVTPGTYHERLQIP +KTFIALIGDN
Subjt:  GSIND-----DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

A0A5D3BJD0 Pectinesterase2.6e-1285.71Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        DAI AAPDNSNT+FYI VTPGTYHERLQIP +KTF+ALIGDN
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

A0A5D3BKF8 Pectinesterase4.0e-1378.18Show/hide
Query:  LSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN
        L  S+ +F +I   AIAAAPDNSNTRFYIRVTPGTYHERLQIP +KTFIALIGDN
Subjt:  LSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN

SwissProt top hitse value%identityAlignment
O81301 Probable pectinesterase/pectinesterase inhibitor 401.1e-0451.22Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        +AI+AAP++S TRF I +  G Y E ++IP  KT I  IGD
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

O81415 Probable pectinesterase/pectinesterase inhibitor 396.5e-0541.43Show/hide
Query:  TKLNISVNIENESYKYLSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        T  N+SV I+            NF +IN DA+ AAP+ S TRF I +  G Y E +++P  KT I  IGD
Subjt:  TKLNISVNIENESYKYLSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

P14280 Pectinesterase 15.5e-0443.9Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        +A+AAAPD S TR+ I V  GTY E +++ ++K  + ++GD
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

P83218 Pectinesterase3.2e-0443.9Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        +A+AAAP++S TR+ IR+  G Y E + +P  K  I  +GD
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

Q1JPL7 Pectinesterase/pectinesterase inhibitor 183.2e-0446.81Show/hide
Query:  FGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        F ++N +A+AAAP+NSNTR+ I V  G Y E + I   K  + L+GD
Subjt:  FGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

Arabidopsis top hitse value%identityAlignment
AT1G11580.1 methylesterase PCR A2.3e-0546.81Show/hide
Query:  FGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        F ++N +A+AAAP+NSNTR+ I V  G Y E + I   K  + L+GD
Subjt:  FGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

AT1G53830.1 pectin methylesterase 28.8e-0545Show/hide
Query:  AIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        A+AAAP+ SN RF I +  G Y E +++   KT I  +GD
Subjt:  AIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

AT3G14310.1 pectin methylesterase 32.6e-0442.5Show/hide
Query:  AIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        A+AAAP+NSN R+ I +  G Y E +++   K  I  +GD
Subjt:  AIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

AT4G02300.1 Plant invertase/pectin methylesterase inhibitor superfamily4.6e-0641.43Show/hide
Query:  TKLNISVNIENESYKYLSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        T  N+SV I+            NF +IN DA+ AAP+ S TRF I +  G Y E +++P  KT I  IGD
Subjt:  TKLNISVNIENESYKYLSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD

AT4G02320.1 Plant invertase/pectin methylesterase inhibitor superfamily7.9e-0651.22Show/hide
Query:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD
        +AI+AAP++S TRF I +  G Y E ++IP  KT I  IGD
Subjt:  DAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATAATGGAACTAAATTGAATATTAGTGTTAACATTGAAAATGAGAGCTACAAGTACCTATCTACCTCTATAAAAAATTTCGGAAGCATCAATGACGAT
GCAATTGCAGCGGCTCCTGATAACTCTAATACACGATTTTACATTCGTGTAACCCCTGGCACTTATCATGAACGTCTTCAAATCCCAACTTCCAAGACTTTCATT
GCTTTGATTGGTGATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAATAATGGAACTAAATTGAATATTAGTGTTAACATTGAAAATGAGAGCTACAAGTACCTATCTACCTCTATAAAAAATTTCGGAAGCATCAATGACGAT
GCAATTGCAGCGGCTCCTGATAACTCTAATACACGATTTTACATTCGTGTAACCCCTGGCACTTATCATGAACGTCTTCAAATCCCAACTTCCAAGACTTTCATT
GCTTTGATTGGTGATAATTAA
Protein sequenceShow/hide protein sequence
MKNNGTKLNISVNIENESYKYLSTSIKNFGSINDDAIAAAPDNSNTRFYIRVTPGTYHERLQIPTSKTFIALIGDN